Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3382 and Dsui_3383 are separated by 386 nucleotides Dsui_3383 and Dsui_3384 are separated by 21 nucleotides
Dsui_3382: Dsui_3382 - universal stress protein UspA-like protein, at 3,624,257 to 3,625,168
_3382
Dsui_3383: Dsui_3383 - cAMP-binding protein, at 3,625,555 to 3,626,256
_3383
Dsui_3384: Dsui_3384 - transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 3,626,278 to 3,628,242
_3384
Position (kb)
3625
3626
3627 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3624.597 kb on + strand, within Dsui_3382 at 3624.603 kb on - strand, within Dsui_3382 at 3624.755 kb on + strand at 3624.762 kb on + strand at 3624.772 kb on + strand at 3624.787 kb on + strand, within Dsui_3382 at 3625.023 kb on - strand, within Dsui_3382 at 3625.094 kb on - strand at 3625.149 kb on + strand at 3625.149 kb on + strand at 3625.250 kb on - strand at 3625.318 kb on - strand at 3625.336 kb on - strand at 3625.545 kb on + strand at 3625.558 kb on - strand at 3625.593 kb on + strand at 3625.593 kb on + strand at 3625.601 kb on - strand at 3625.611 kb on - strand at 3625.616 kb on - strand at 3625.655 kb on + strand, within Dsui_3383 at 3625.821 kb on - strand, within Dsui_3383 at 3625.888 kb on - strand, within Dsui_3383 at 3625.918 kb on + strand, within Dsui_3383 at 3625.926 kb on - strand, within Dsui_3383 at 3625.990 kb on + strand, within Dsui_3383 at 3626.021 kb on + strand, within Dsui_3383 at 3626.028 kb on + strand, within Dsui_3383 at 3626.109 kb on + strand, within Dsui_3383 at 3626.232 kb on + strand at 3626.240 kb on - strand at 3626.325 kb on - strand at 3626.366 kb on + strand at 3626.535 kb on + strand, within Dsui_3384 at 3626.556 kb on + strand, within Dsui_3384 at 3626.561 kb on + strand, within Dsui_3384 at 3626.561 kb on + strand, within Dsui_3384 at 3626.569 kb on - strand, within Dsui_3384 at 3626.580 kb on - strand, within Dsui_3384 at 3626.690 kb on + strand, within Dsui_3384 at 3626.706 kb on - strand, within Dsui_3384 at 3626.729 kb on - strand, within Dsui_3384 at 3626.841 kb on - strand, within Dsui_3384 at 3626.875 kb on + strand, within Dsui_3384 at 3626.878 kb on - strand, within Dsui_3384 at 3626.883 kb on - strand, within Dsui_3384 at 3626.939 kb on - strand, within Dsui_3384 at 3626.980 kb on + strand, within Dsui_3384 at 3627.171 kb on + strand, within Dsui_3384 at 3627.212 kb on + strand, within Dsui_3384
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 3,624,597 + Dsui_3382 0.37 -0.4 3,624,603 - Dsui_3382 0.38 -0.4 3,624,755 + +1.2 3,624,762 + +1.2 3,624,772 + +1.2 3,624,787 + Dsui_3382 0.58 +0.2 3,625,023 - Dsui_3382 0.84 -0.8 3,625,094 - -0.0 3,625,149 + +1.3 3,625,149 + -0.3 3,625,250 - +2.2 3,625,318 - +0.6 3,625,336 - +2.2 3,625,545 + -1.3 3,625,558 - -0.2 3,625,593 + -1.8 3,625,593 + -0.7 3,625,601 - -0.7 3,625,611 - +0.9 3,625,616 - +1.6 3,625,655 + Dsui_3383 0.14 -1.2 3,625,821 - Dsui_3383 0.38 -0.4 3,625,888 - Dsui_3383 0.47 +0.1 3,625,918 + Dsui_3383 0.52 -0.7 3,625,926 - Dsui_3383 0.53 +0.2 3,625,990 + Dsui_3383 0.62 -2.1 3,626,021 + Dsui_3383 0.66 -1.6 3,626,028 + Dsui_3383 0.67 -1.3 3,626,109 + Dsui_3383 0.79 -1.2 3,626,232 + -0.7 3,626,240 - -0.1 3,626,325 - +0.7 3,626,366 + -0.3 3,626,535 + Dsui_3384 0.13 +0.6 3,626,556 + Dsui_3384 0.14 +0.6 3,626,561 + Dsui_3384 0.14 -0.2 3,626,561 + Dsui_3384 0.14 +0.5 3,626,569 - Dsui_3384 0.15 +0.4 3,626,580 - Dsui_3384 0.15 +0.2 3,626,690 + Dsui_3384 0.21 +1.8 3,626,706 - Dsui_3384 0.22 -0.9 3,626,729 - Dsui_3384 0.23 +0.3 3,626,841 - Dsui_3384 0.29 +0.6 3,626,875 + Dsui_3384 0.30 +0.8 3,626,878 - Dsui_3384 0.31 +1.0 3,626,883 - Dsui_3384 0.31 -0.1 3,626,939 - Dsui_3384 0.34 +0.6 3,626,980 + Dsui_3384 0.36 +0.0 3,627,171 + Dsui_3384 0.45 +0.6 3,627,212 + Dsui_3384 0.48 +0.8
Or see this region's nucleotide sequence