Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3334 and Dsui_3335 are separated by 85 nucleotides Dsui_3335 and Dsui_3336 are separated by 51 nucleotides
Dsui_3334: Dsui_3334 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,573,031 to 3,575,670
_3334
Dsui_3335: Dsui_3335 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,575,756 to 3,576,736
_3335
Dsui_3336: Dsui_3336 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, at 3,576,788 to 3,577,912
_3336
Position (kb)
3575
3576
3577 Strain fitness (log2 ratio)
-1
0
1
2 at 3574.808 kb on + strand, within Dsui_3334 at 3574.827 kb on - strand, within Dsui_3334 at 3574.834 kb on + strand, within Dsui_3334 at 3574.884 kb on - strand at 3574.899 kb on + strand, within Dsui_3334 at 3574.907 kb on - strand, within Dsui_3334 at 3574.907 kb on - strand, within Dsui_3334 at 3574.925 kb on + strand, within Dsui_3334 at 3574.953 kb on - strand, within Dsui_3334 at 3574.964 kb on + strand, within Dsui_3334 at 3574.986 kb on - strand, within Dsui_3334 at 3575.028 kb on - strand, within Dsui_3334 at 3575.045 kb on + strand, within Dsui_3334 at 3575.078 kb on + strand, within Dsui_3334 at 3575.078 kb on + strand at 3575.078 kb on + strand, within Dsui_3334 at 3575.086 kb on - strand, within Dsui_3334 at 3575.185 kb on - strand, within Dsui_3334 at 3575.214 kb on + strand, within Dsui_3334 at 3575.254 kb on - strand, within Dsui_3334 at 3575.254 kb on - strand, within Dsui_3334 at 3575.436 kb on - strand at 3575.463 kb on + strand at 3575.480 kb on + strand at 3575.526 kb on - strand at 3575.549 kb on - strand at 3575.550 kb on + strand at 3575.589 kb on + strand at 3575.609 kb on + strand at 3575.751 kb on - strand at 3575.905 kb on - strand, within Dsui_3335 at 3575.910 kb on - strand, within Dsui_3335 at 3575.911 kb on - strand, within Dsui_3335 at 3576.056 kb on - strand, within Dsui_3335 at 3576.056 kb on - strand, within Dsui_3335 at 3576.285 kb on - strand, within Dsui_3335 at 3576.332 kb on - strand, within Dsui_3335 at 3576.366 kb on + strand, within Dsui_3335 at 3576.366 kb on - strand, within Dsui_3335 at 3576.400 kb on + strand, within Dsui_3335 at 3576.423 kb on + strand, within Dsui_3335 at 3576.423 kb on + strand, within Dsui_3335 at 3576.423 kb on + strand, within Dsui_3335 at 3576.431 kb on - strand, within Dsui_3335 at 3576.447 kb on - strand, within Dsui_3335 at 3576.492 kb on + strand, within Dsui_3335 at 3576.659 kb on - strand at 3576.663 kb on + strand at 3576.664 kb on - strand at 3576.731 kb on + strand at 3576.739 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 3,574,808 + Dsui_3334 0.67 +0.3 3,574,827 - Dsui_3334 0.68 -0.1 3,574,834 + Dsui_3334 0.68 -0.2 3,574,884 - -0.2 3,574,899 + Dsui_3334 0.71 -0.0 3,574,907 - Dsui_3334 0.71 +0.0 3,574,907 - Dsui_3334 0.71 +0.5 3,574,925 + Dsui_3334 0.72 -0.2 3,574,953 - Dsui_3334 0.73 +0.5 3,574,964 + Dsui_3334 0.73 +1.8 3,574,986 - Dsui_3334 0.74 -0.5 3,575,028 - Dsui_3334 0.76 -0.9 3,575,045 + Dsui_3334 0.76 -0.2 3,575,078 + Dsui_3334 0.78 -0.9 3,575,078 + -0.7 3,575,078 + Dsui_3334 0.78 -0.1 3,575,086 - Dsui_3334 0.78 -0.3 3,575,185 - Dsui_3334 0.82 +0.3 3,575,214 + Dsui_3334 0.83 -0.6 3,575,254 - Dsui_3334 0.84 -0.1 3,575,254 - Dsui_3334 0.84 +0.4 3,575,436 - -1.7 3,575,463 + +0.1 3,575,480 + -1.2 3,575,526 - +0.6 3,575,549 - +0.0 3,575,550 + +0.1 3,575,589 + -1.0 3,575,609 + -0.2 3,575,751 - -0.6 3,575,905 - Dsui_3335 0.15 -0.1 3,575,910 - Dsui_3335 0.16 +0.1 3,575,911 - Dsui_3335 0.16 +0.7 3,576,056 - Dsui_3335 0.31 +0.4 3,576,056 - Dsui_3335 0.31 +0.5 3,576,285 - Dsui_3335 0.54 +0.2 3,576,332 - Dsui_3335 0.59 +0.5 3,576,366 + Dsui_3335 0.62 -0.9 3,576,366 - Dsui_3335 0.62 -0.2 3,576,400 + Dsui_3335 0.66 +0.1 3,576,423 + Dsui_3335 0.68 +0.4 3,576,423 + Dsui_3335 0.68 +0.4 3,576,423 + Dsui_3335 0.68 -0.8 3,576,431 - Dsui_3335 0.69 +1.6 3,576,447 - Dsui_3335 0.70 +0.4 3,576,492 + Dsui_3335 0.75 -0.2 3,576,659 - +0.0 3,576,663 + +0.3 3,576,664 - +0.4 3,576,731 + -0.3 3,576,739 - -0.3
Or see this region's nucleotide sequence