Strain Fitness in Dechlorosoma suillum PS around Dsui_3335

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3334 and Dsui_3335 are separated by 85 nucleotidesDsui_3335 and Dsui_3336 are separated by 51 nucleotides Dsui_3334: Dsui_3334 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,573,031 to 3,575,670 _3334 Dsui_3335: Dsui_3335 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,575,756 to 3,576,736 _3335 Dsui_3336: Dsui_3336 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, at 3,576,788 to 3,577,912 _3336 Position (kb) 3575 3576 3577Strain fitness (log2 ratio) -1 0 1 2at 3574.808 kb on + strand, within Dsui_3334at 3574.827 kb on - strand, within Dsui_3334at 3574.834 kb on + strand, within Dsui_3334at 3574.884 kb on - strandat 3574.899 kb on + strand, within Dsui_3334at 3574.907 kb on - strand, within Dsui_3334at 3574.907 kb on - strand, within Dsui_3334at 3574.925 kb on + strand, within Dsui_3334at 3574.953 kb on - strand, within Dsui_3334at 3574.964 kb on + strand, within Dsui_3334at 3574.986 kb on - strand, within Dsui_3334at 3575.028 kb on - strand, within Dsui_3334at 3575.045 kb on + strand, within Dsui_3334at 3575.078 kb on + strand, within Dsui_3334at 3575.078 kb on + strandat 3575.078 kb on + strand, within Dsui_3334at 3575.086 kb on - strand, within Dsui_3334at 3575.185 kb on - strand, within Dsui_3334at 3575.214 kb on + strand, within Dsui_3334at 3575.254 kb on - strand, within Dsui_3334at 3575.254 kb on - strand, within Dsui_3334at 3575.436 kb on - strandat 3575.463 kb on + strandat 3575.480 kb on + strandat 3575.526 kb on - strandat 3575.549 kb on - strandat 3575.550 kb on + strandat 3575.589 kb on + strandat 3575.609 kb on + strandat 3575.751 kb on - strandat 3575.905 kb on - strand, within Dsui_3335at 3575.910 kb on - strand, within Dsui_3335at 3575.911 kb on - strand, within Dsui_3335at 3576.056 kb on - strand, within Dsui_3335at 3576.056 kb on - strand, within Dsui_3335at 3576.285 kb on - strand, within Dsui_3335at 3576.332 kb on - strand, within Dsui_3335at 3576.366 kb on + strand, within Dsui_3335at 3576.366 kb on - strand, within Dsui_3335at 3576.400 kb on + strand, within Dsui_3335at 3576.423 kb on + strand, within Dsui_3335at 3576.423 kb on + strand, within Dsui_3335at 3576.423 kb on + strand, within Dsui_3335at 3576.431 kb on - strand, within Dsui_3335at 3576.447 kb on - strand, within Dsui_3335at 3576.492 kb on + strand, within Dsui_3335at 3576.659 kb on - strandat 3576.663 kb on + strandat 3576.664 kb on - strandat 3576.731 kb on + strandat 3576.739 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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3,574,808 + Dsui_3334 0.67 +0.3
3,574,827 - Dsui_3334 0.68 -0.1
3,574,834 + Dsui_3334 0.68 -0.2
3,574,884 - -0.2
3,574,899 + Dsui_3334 0.71 -0.0
3,574,907 - Dsui_3334 0.71 +0.0
3,574,907 - Dsui_3334 0.71 +0.5
3,574,925 + Dsui_3334 0.72 -0.2
3,574,953 - Dsui_3334 0.73 +0.5
3,574,964 + Dsui_3334 0.73 +1.8
3,574,986 - Dsui_3334 0.74 -0.5
3,575,028 - Dsui_3334 0.76 -0.9
3,575,045 + Dsui_3334 0.76 -0.2
3,575,078 + Dsui_3334 0.78 -0.9
3,575,078 + -0.7
3,575,078 + Dsui_3334 0.78 -0.1
3,575,086 - Dsui_3334 0.78 -0.3
3,575,185 - Dsui_3334 0.82 +0.3
3,575,214 + Dsui_3334 0.83 -0.6
3,575,254 - Dsui_3334 0.84 -0.1
3,575,254 - Dsui_3334 0.84 +0.4
3,575,436 - -1.7
3,575,463 + +0.1
3,575,480 + -1.2
3,575,526 - +0.6
3,575,549 - +0.0
3,575,550 + +0.1
3,575,589 + -1.0
3,575,609 + -0.2
3,575,751 - -0.6
3,575,905 - Dsui_3335 0.15 -0.1
3,575,910 - Dsui_3335 0.16 +0.1
3,575,911 - Dsui_3335 0.16 +0.7
3,576,056 - Dsui_3335 0.31 +0.4
3,576,056 - Dsui_3335 0.31 +0.5
3,576,285 - Dsui_3335 0.54 +0.2
3,576,332 - Dsui_3335 0.59 +0.5
3,576,366 + Dsui_3335 0.62 -0.9
3,576,366 - Dsui_3335 0.62 -0.2
3,576,400 + Dsui_3335 0.66 +0.1
3,576,423 + Dsui_3335 0.68 +0.4
3,576,423 + Dsui_3335 0.68 +0.4
3,576,423 + Dsui_3335 0.68 -0.8
3,576,431 - Dsui_3335 0.69 +1.6
3,576,447 - Dsui_3335 0.70 +0.4
3,576,492 + Dsui_3335 0.75 -0.2
3,576,659 - +0.0
3,576,663 + +0.3
3,576,664 - +0.4
3,576,731 + -0.3
3,576,739 - -0.3

Or see this region's nucleotide sequence