Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3168 and Dsui_3169 are separated by 202 nucleotides Dsui_3169 and Dsui_3170 are separated by 111 nucleotides
Dsui_3168: Dsui_3168 - hypothetical protein, at 3,397,411 to 3,398,565
_3168
Dsui_3169: Dsui_3169 - putative metal-binding protein, at 3,398,768 to 3,399,268
_3169
Dsui_3170: Dsui_3170 - PilZ domain-containing protein, at 3,399,380 to 3,400,111
_3170
Position (kb)
3398
3399
3400 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3397.778 kb on - strand at 3397.911 kb on - strand, within Dsui_3168 at 3398.250 kb on - strand, within Dsui_3168 at 3398.313 kb on - strand, within Dsui_3168 at 3398.355 kb on - strand, within Dsui_3168 at 3398.563 kb on - strand at 3398.614 kb on + strand at 3398.630 kb on + strand at 3398.742 kb on + strand at 3398.810 kb on - strand at 3398.916 kb on + strand, within Dsui_3169 at 3398.948 kb on - strand, within Dsui_3169 at 3399.041 kb on - strand at 3399.091 kb on - strand at 3399.201 kb on + strand, within Dsui_3169 at 3399.239 kb on + strand at 3399.296 kb on + strand at 3399.317 kb on + strand at 3399.329 kb on + strand at 3399.474 kb on + strand, within Dsui_3170 at 3399.514 kb on + strand, within Dsui_3170 at 3399.618 kb on - strand, within Dsui_3170 at 3399.667 kb on + strand, within Dsui_3170 at 3399.690 kb on + strand, within Dsui_3170 at 3399.729 kb on + strand, within Dsui_3170 at 3399.762 kb on - strand at 3399.887 kb on - strand, within Dsui_3170 at 3399.936 kb on - strand, within Dsui_3170 at 3399.972 kb on + strand, within Dsui_3170 at 3399.994 kb on - strand at 3400.043 kb on + strand at 3400.051 kb on - strand at 3400.151 kb on + strand at 3400.160 kb on - strand at 3400.235 kb on - strand at 3400.253 kb on + strand at 3400.253 kb on + strand at 3400.261 kb on - strand at 3400.261 kb on - strand at 3400.261 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 3,397,778 - +2.5 3,397,911 - Dsui_3168 0.43 -0.3 3,398,250 - Dsui_3168 0.73 +0.2 3,398,313 - Dsui_3168 0.78 +1.1 3,398,355 - Dsui_3168 0.82 -0.4 3,398,563 - +0.8 3,398,614 + +0.1 3,398,630 + +0.8 3,398,742 + +1.5 3,398,810 - +1.1 3,398,916 + Dsui_3169 0.30 -1.7 3,398,948 - Dsui_3169 0.36 +0.5 3,399,041 - +1.1 3,399,091 - +0.5 3,399,201 + Dsui_3169 0.86 -1.8 3,399,239 + -2.5 3,399,296 + -2.7 3,399,317 + -0.3 3,399,329 + +0.0 3,399,474 + Dsui_3170 0.13 +0.3 3,399,514 + Dsui_3170 0.18 +0.5 3,399,618 - Dsui_3170 0.33 +0.1 3,399,667 + Dsui_3170 0.39 +0.0 3,399,690 + Dsui_3170 0.42 -0.3 3,399,729 + Dsui_3170 0.48 +0.6 3,399,762 - -0.7 3,399,887 - Dsui_3170 0.69 -1.5 3,399,936 - Dsui_3170 0.76 +0.3 3,399,972 + Dsui_3170 0.81 -1.9 3,399,994 - +0.1 3,400,043 + +0.1 3,400,051 - +2.1 3,400,151 + +0.5 3,400,160 - +1.1 3,400,235 - +0.1 3,400,253 + +0.7 3,400,253 + -0.8 3,400,261 - +0.5 3,400,261 - -1.2 3,400,261 - -0.0
Or see this region's nucleotide sequence