Strain Fitness in Dechlorosoma suillum PS around Dsui_3169

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3168 and Dsui_3169 are separated by 202 nucleotidesDsui_3169 and Dsui_3170 are separated by 111 nucleotides Dsui_3168: Dsui_3168 - hypothetical protein, at 3,397,411 to 3,398,565 _3168 Dsui_3169: Dsui_3169 - putative metal-binding protein, at 3,398,768 to 3,399,268 _3169 Dsui_3170: Dsui_3170 - PilZ domain-containing protein, at 3,399,380 to 3,400,111 _3170 Position (kb) 3398 3399 3400Strain fitness (log2 ratio) -2 -1 0 1 2at 3397.778 kb on - strandat 3397.911 kb on - strand, within Dsui_3168at 3398.250 kb on - strand, within Dsui_3168at 3398.313 kb on - strand, within Dsui_3168at 3398.355 kb on - strand, within Dsui_3168at 3398.563 kb on - strandat 3398.614 kb on + strandat 3398.630 kb on + strandat 3398.742 kb on + strandat 3398.810 kb on - strandat 3398.916 kb on + strand, within Dsui_3169at 3398.948 kb on - strand, within Dsui_3169at 3399.041 kb on - strandat 3399.091 kb on - strandat 3399.201 kb on + strand, within Dsui_3169at 3399.239 kb on + strandat 3399.296 kb on + strandat 3399.317 kb on + strandat 3399.329 kb on + strandat 3399.474 kb on + strand, within Dsui_3170at 3399.514 kb on + strand, within Dsui_3170at 3399.618 kb on - strand, within Dsui_3170at 3399.667 kb on + strand, within Dsui_3170at 3399.690 kb on + strand, within Dsui_3170at 3399.729 kb on + strand, within Dsui_3170at 3399.762 kb on - strandat 3399.887 kb on - strand, within Dsui_3170at 3399.936 kb on - strand, within Dsui_3170at 3399.972 kb on + strand, within Dsui_3170at 3399.994 kb on - strandat 3400.043 kb on + strandat 3400.051 kb on - strandat 3400.151 kb on + strandat 3400.160 kb on - strandat 3400.235 kb on - strandat 3400.253 kb on + strandat 3400.253 kb on + strandat 3400.261 kb on - strandat 3400.261 kb on - strandat 3400.261 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
remove
3,397,778 - +2.5
3,397,911 - Dsui_3168 0.43 -0.3
3,398,250 - Dsui_3168 0.73 +0.2
3,398,313 - Dsui_3168 0.78 +1.1
3,398,355 - Dsui_3168 0.82 -0.4
3,398,563 - +0.8
3,398,614 + +0.1
3,398,630 + +0.8
3,398,742 + +1.5
3,398,810 - +1.1
3,398,916 + Dsui_3169 0.30 -1.7
3,398,948 - Dsui_3169 0.36 +0.5
3,399,041 - +1.1
3,399,091 - +0.5
3,399,201 + Dsui_3169 0.86 -1.8
3,399,239 + -2.5
3,399,296 + -2.7
3,399,317 + -0.3
3,399,329 + +0.0
3,399,474 + Dsui_3170 0.13 +0.3
3,399,514 + Dsui_3170 0.18 +0.5
3,399,618 - Dsui_3170 0.33 +0.1
3,399,667 + Dsui_3170 0.39 +0.0
3,399,690 + Dsui_3170 0.42 -0.3
3,399,729 + Dsui_3170 0.48 +0.6
3,399,762 - -0.7
3,399,887 - Dsui_3170 0.69 -1.5
3,399,936 - Dsui_3170 0.76 +0.3
3,399,972 + Dsui_3170 0.81 -1.9
3,399,994 - +0.1
3,400,043 + +0.1
3,400,051 - +2.1
3,400,151 + +0.5
3,400,160 - +1.1
3,400,235 - +0.1
3,400,253 + +0.7
3,400,253 + -0.8
3,400,261 - +0.5
3,400,261 - -1.2
3,400,261 - -0.0

Or see this region's nucleotide sequence