Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3035 and Dsui_3036 are separated by 61 nucleotides Dsui_3036 and Dsui_3037 are separated by 85 nucleotides
Dsui_3035: Dsui_3035 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,249,849 to 3,251,012
_3035
Dsui_3036: Dsui_3036 - Zn-finger containing NTP pyrophosphohydrolase, at 3,251,074 to 3,251,643
_3036
Dsui_3037: Dsui_3037 - proton-translocating NADH-quinone oxidoreductase, chain N, at 3,251,729 to 3,253,207
_3037
Position (kb)
3251
3252 Strain fitness (log2 ratio)
-1
0
1 at 3250.120 kb on + strand, within Dsui_3035 at 3250.338 kb on - strand, within Dsui_3035 at 3250.376 kb on + strand, within Dsui_3035 at 3250.457 kb on + strand, within Dsui_3035 at 3250.476 kb on - strand, within Dsui_3035 at 3250.487 kb on + strand, within Dsui_3035 at 3250.649 kb on + strand, within Dsui_3035 at 3250.649 kb on + strand, within Dsui_3035 at 3250.657 kb on - strand, within Dsui_3035 at 3250.741 kb on - strand, within Dsui_3035 at 3250.851 kb on - strand, within Dsui_3035 at 3251.026 kb on - strand at 3251.107 kb on + strand at 3251.142 kb on - strand, within Dsui_3036 at 3251.199 kb on - strand, within Dsui_3036 at 3251.246 kb on - strand, within Dsui_3036 at 3251.306 kb on - strand, within Dsui_3036 at 3251.494 kb on + strand, within Dsui_3036 at 3251.520 kb on + strand, within Dsui_3036 at 3251.550 kb on - strand, within Dsui_3036 at 3251.576 kb on + strand, within Dsui_3036 at 3251.584 kb on - strand, within Dsui_3036 at 3251.591 kb on + strand at 3251.594 kb on - strand at 3251.657 kb on - strand at 3251.659 kb on + strand at 3251.703 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 3,250,120 + Dsui_3035 0.23 -0.1 3,250,338 - Dsui_3035 0.42 -0.4 3,250,376 + Dsui_3035 0.45 -0.5 3,250,457 + Dsui_3035 0.52 -0.0 3,250,476 - Dsui_3035 0.54 -0.2 3,250,487 + Dsui_3035 0.55 -0.5 3,250,649 + Dsui_3035 0.69 -0.2 3,250,649 + Dsui_3035 0.69 -0.2 3,250,657 - Dsui_3035 0.69 -0.1 3,250,741 - Dsui_3035 0.77 -0.6 3,250,851 - Dsui_3035 0.86 -0.2 3,251,026 - +0.0 3,251,107 + -0.5 3,251,142 - Dsui_3036 0.12 -0.1 3,251,199 - Dsui_3036 0.22 +0.1 3,251,246 - Dsui_3036 0.30 +0.1 3,251,306 - Dsui_3036 0.41 +0.1 3,251,494 + Dsui_3036 0.74 +0.1 3,251,520 + Dsui_3036 0.78 +0.2 3,251,550 - Dsui_3036 0.84 -0.1 3,251,576 + Dsui_3036 0.88 -0.2 3,251,584 - Dsui_3036 0.89 +1.1 3,251,591 + -0.0 3,251,594 - -0.1 3,251,657 - +0.1 3,251,659 + -0.5 3,251,703 - -0.2
Or see this region's nucleotide sequence