Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3030 and Dsui_3031 are separated by 289 nucleotides Dsui_3031 and Dsui_3032 are separated by 33 nucleotides
Dsui_3030: Dsui_3030 - NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit, at 3,240,952 to 3,242,760
_3030
Dsui_3031: Dsui_3031 - enoyl-(acyl-carrier-protein) reductase (NADH), at 3,243,050 to 3,243,814
_3031
Dsui_3032: Dsui_3032 - phosphotransacetylase, at 3,243,848 to 3,245,260
_3032
Position (kb)
3243
3244 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3242.079 kb on + strand, within Dsui_3030 at 3242.087 kb on - strand, within Dsui_3030 at 3242.127 kb on + strand, within Dsui_3030 at 3242.159 kb on - strand, within Dsui_3030 at 3242.218 kb on - strand, within Dsui_3030 at 3242.250 kb on + strand, within Dsui_3030 at 3242.282 kb on - strand, within Dsui_3030 at 3242.468 kb on + strand at 3242.486 kb on - strand, within Dsui_3030 at 3242.609 kb on - strand at 3242.609 kb on - strand at 3242.609 kb on - strand at 3242.609 kb on - strand at 3242.728 kb on - strand at 3242.800 kb on - strand at 3242.800 kb on - strand at 3242.826 kb on - strand at 3242.836 kb on - strand at 3242.993 kb on + strand at 3242.994 kb on + strand at 3243.001 kb on - strand at 3243.009 kb on - strand at 3243.042 kb on - strand at 3243.097 kb on + strand at 3243.103 kb on + strand at 3243.118 kb on - strand at 3243.118 kb on - strand at 3243.118 kb on - strand at 3243.118 kb on - strand at 3243.284 kb on + strand, within Dsui_3031 at 3243.321 kb on + strand, within Dsui_3031 at 3243.359 kb on + strand, within Dsui_3031 at 3243.367 kb on - strand, within Dsui_3031 at 3243.380 kb on + strand, within Dsui_3031 at 3243.441 kb on + strand, within Dsui_3031 at 3243.495 kb on + strand, within Dsui_3031 at 3243.508 kb on - strand at 3243.684 kb on + strand, within Dsui_3031 at 3243.825 kb on - strand at 3243.851 kb on - strand at 3243.857 kb on + strand at 3243.915 kb on + strand at 3244.034 kb on + strand, within Dsui_3032 at 3244.042 kb on - strand, within Dsui_3032 at 3244.498 kb on + strand, within Dsui_3032 at 3244.524 kb on + strand, within Dsui_3032 at 3244.532 kb on - strand, within Dsui_3032 at 3244.737 kb on + strand, within Dsui_3032 at 3244.798 kb on + strand, within Dsui_3032
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 3,242,079 + Dsui_3030 0.62 -2.0 3,242,087 - Dsui_3030 0.63 -0.5 3,242,127 + Dsui_3030 0.65 +0.2 3,242,159 - Dsui_3030 0.67 -0.6 3,242,218 - Dsui_3030 0.70 -0.9 3,242,250 + Dsui_3030 0.72 -0.2 3,242,282 - Dsui_3030 0.74 -0.8 3,242,468 + -0.5 3,242,486 - Dsui_3030 0.85 -1.5 3,242,609 - -1.4 3,242,609 - +1.4 3,242,609 - +0.1 3,242,609 - -1.3 3,242,728 - -2.1 3,242,800 - -1.3 3,242,800 - -1.7 3,242,826 - +0.5 3,242,836 - +0.1 3,242,993 + +0.0 3,242,994 + -0.5 3,243,001 - +2.1 3,243,009 - +0.4 3,243,042 - +0.1 3,243,097 + -0.4 3,243,103 + -0.4 3,243,118 - -0.6 3,243,118 - -1.2 3,243,118 - +0.5 3,243,118 - -1.2 3,243,284 + Dsui_3031 0.31 -0.4 3,243,321 + Dsui_3031 0.35 +0.3 3,243,359 + Dsui_3031 0.40 -1.1 3,243,367 - Dsui_3031 0.41 -0.6 3,243,380 + Dsui_3031 0.43 -0.5 3,243,441 + Dsui_3031 0.51 -0.1 3,243,495 + Dsui_3031 0.58 -0.6 3,243,508 - +0.5 3,243,684 + Dsui_3031 0.83 -0.8 3,243,825 - -1.5 3,243,851 - -1.0 3,243,857 + -0.6 3,243,915 + -0.5 3,244,034 + Dsui_3032 0.13 -1.2 3,244,042 - Dsui_3032 0.14 -2.6 3,244,498 + Dsui_3032 0.46 -0.0 3,244,524 + Dsui_3032 0.48 +0.5 3,244,532 - Dsui_3032 0.48 -0.3 3,244,737 + Dsui_3032 0.63 -0.7 3,244,798 + Dsui_3032 0.67 -0.5
Or see this region's nucleotide sequence