Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2928 and Dsui_2929 are separated by 108 nucleotides Dsui_2929 and Dsui_2930 are separated by 125 nucleotides
Dsui_2928: Dsui_2928 - ABC-type Fe3+ transport system, periplasmic component, at 3,131,630 to 3,132,652
_2928
Dsui_2929: Dsui_2929 - hypothetical protein, at 3,132,761 to 3,133,180
_2929
Dsui_2930: Dsui_2930 - outer membrane protein, at 3,133,306 to 3,134,676
_2930
Position (kb)
3132
3133
3134 Strain fitness (log2 ratio)
-1
0
1
2 at 3131.843 kb on + strand, within Dsui_2928 at 3131.843 kb on + strand, within Dsui_2928 at 3131.891 kb on - strand, within Dsui_2928 at 3131.894 kb on + strand, within Dsui_2928 at 3131.907 kb on + strand, within Dsui_2928 at 3131.957 kb on - strand, within Dsui_2928 at 3132.022 kb on - strand, within Dsui_2928 at 3132.045 kb on - strand, within Dsui_2928 at 3132.075 kb on - strand, within Dsui_2928 at 3132.086 kb on + strand, within Dsui_2928 at 3132.094 kb on - strand, within Dsui_2928 at 3132.099 kb on - strand, within Dsui_2928 at 3132.108 kb on + strand, within Dsui_2928 at 3132.178 kb on - strand, within Dsui_2928 at 3132.238 kb on + strand, within Dsui_2928 at 3132.238 kb on + strand, within Dsui_2928 at 3132.241 kb on - strand, within Dsui_2928 at 3132.246 kb on - strand at 3132.246 kb on - strand, within Dsui_2928 at 3132.246 kb on - strand at 3132.246 kb on - strand at 3132.328 kb on + strand at 3132.427 kb on + strand, within Dsui_2928 at 3132.435 kb on - strand, within Dsui_2928 at 3132.515 kb on + strand, within Dsui_2928 at 3132.526 kb on + strand at 3132.565 kb on + strand at 3132.573 kb on - strand at 3132.634 kb on - strand at 3132.644 kb on - strand at 3132.776 kb on + strand at 3132.880 kb on - strand at 3132.963 kb on - strand, within Dsui_2929 at 3132.973 kb on - strand, within Dsui_2929 at 3133.000 kb on - strand, within Dsui_2929 at 3133.007 kb on + strand, within Dsui_2929 at 3133.011 kb on + strand, within Dsui_2929 at 3133.250 kb on + strand at 3133.250 kb on + strand at 3133.681 kb on + strand, within Dsui_2930 at 3133.802 kb on + strand, within Dsui_2930 at 3133.854 kb on - strand at 3133.928 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 3,131,843 + Dsui_2928 0.21 -1.5 3,131,843 + Dsui_2928 0.21 +0.1 3,131,891 - Dsui_2928 0.26 -1.3 3,131,894 + Dsui_2928 0.26 +0.4 3,131,907 + Dsui_2928 0.27 -0.1 3,131,957 - Dsui_2928 0.32 -0.3 3,132,022 - Dsui_2928 0.38 -1.0 3,132,045 - Dsui_2928 0.41 +0.7 3,132,075 - Dsui_2928 0.43 -0.5 3,132,086 + Dsui_2928 0.45 +0.1 3,132,094 - Dsui_2928 0.45 -1.1 3,132,099 - Dsui_2928 0.46 -1.6 3,132,108 + Dsui_2928 0.47 -0.6 3,132,178 - Dsui_2928 0.54 -1.1 3,132,238 + Dsui_2928 0.59 +0.4 3,132,238 + Dsui_2928 0.59 -0.2 3,132,241 - Dsui_2928 0.60 +0.4 3,132,246 - +0.1 3,132,246 - Dsui_2928 0.60 -0.4 3,132,246 - +2.1 3,132,246 - +0.8 3,132,328 + -0.5 3,132,427 + Dsui_2928 0.78 +0.1 3,132,435 - Dsui_2928 0.79 +0.7 3,132,515 + Dsui_2928 0.87 +0.3 3,132,526 + +1.1 3,132,565 + -0.2 3,132,573 - -0.1 3,132,634 - -0.7 3,132,644 - +0.6 3,132,776 + +0.3 3,132,880 - +0.8 3,132,963 - Dsui_2929 0.48 -0.1 3,132,973 - Dsui_2929 0.50 -0.7 3,133,000 - Dsui_2929 0.57 -1.7 3,133,007 + Dsui_2929 0.59 +0.2 3,133,011 + Dsui_2929 0.60 -0.7 3,133,250 + -0.2 3,133,250 + +1.1 3,133,681 + Dsui_2930 0.27 +0.8 3,133,802 + Dsui_2930 0.36 -0.2 3,133,854 - +2.1 3,133,928 + +0.5
Or see this region's nucleotide sequence