Strain Fitness in Dechlorosoma suillum PS around Dsui_2929

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2928 and Dsui_2929 are separated by 108 nucleotidesDsui_2929 and Dsui_2930 are separated by 125 nucleotides Dsui_2928: Dsui_2928 - ABC-type Fe3+ transport system, periplasmic component, at 3,131,630 to 3,132,652 _2928 Dsui_2929: Dsui_2929 - hypothetical protein, at 3,132,761 to 3,133,180 _2929 Dsui_2930: Dsui_2930 - outer membrane protein, at 3,133,306 to 3,134,676 _2930 Position (kb) 3132 3133 3134Strain fitness (log2 ratio) -1 0 1 2at 3131.843 kb on + strand, within Dsui_2928at 3131.843 kb on + strand, within Dsui_2928at 3131.891 kb on - strand, within Dsui_2928at 3131.894 kb on + strand, within Dsui_2928at 3131.907 kb on + strand, within Dsui_2928at 3131.957 kb on - strand, within Dsui_2928at 3132.022 kb on - strand, within Dsui_2928at 3132.045 kb on - strand, within Dsui_2928at 3132.075 kb on - strand, within Dsui_2928at 3132.086 kb on + strand, within Dsui_2928at 3132.094 kb on - strand, within Dsui_2928at 3132.099 kb on - strand, within Dsui_2928at 3132.108 kb on + strand, within Dsui_2928at 3132.178 kb on - strand, within Dsui_2928at 3132.238 kb on + strand, within Dsui_2928at 3132.238 kb on + strand, within Dsui_2928at 3132.241 kb on - strand, within Dsui_2928at 3132.246 kb on - strandat 3132.246 kb on - strand, within Dsui_2928at 3132.246 kb on - strandat 3132.246 kb on - strandat 3132.328 kb on + strandat 3132.427 kb on + strand, within Dsui_2928at 3132.435 kb on - strand, within Dsui_2928at 3132.515 kb on + strand, within Dsui_2928at 3132.526 kb on + strandat 3132.565 kb on + strandat 3132.573 kb on - strandat 3132.634 kb on - strandat 3132.644 kb on - strandat 3132.776 kb on + strandat 3132.880 kb on - strandat 3132.963 kb on - strand, within Dsui_2929at 3132.973 kb on - strand, within Dsui_2929at 3133.000 kb on - strand, within Dsui_2929at 3133.007 kb on + strand, within Dsui_2929at 3133.011 kb on + strand, within Dsui_2929at 3133.250 kb on + strandat 3133.250 kb on + strandat 3133.681 kb on + strand, within Dsui_2930at 3133.802 kb on + strand, within Dsui_2930at 3133.854 kb on - strandat 3133.928 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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3,131,843 + Dsui_2928 0.21 -1.5
3,131,843 + Dsui_2928 0.21 +0.1
3,131,891 - Dsui_2928 0.26 -1.3
3,131,894 + Dsui_2928 0.26 +0.4
3,131,907 + Dsui_2928 0.27 -0.1
3,131,957 - Dsui_2928 0.32 -0.3
3,132,022 - Dsui_2928 0.38 -1.0
3,132,045 - Dsui_2928 0.41 +0.7
3,132,075 - Dsui_2928 0.43 -0.5
3,132,086 + Dsui_2928 0.45 +0.1
3,132,094 - Dsui_2928 0.45 -1.1
3,132,099 - Dsui_2928 0.46 -1.6
3,132,108 + Dsui_2928 0.47 -0.6
3,132,178 - Dsui_2928 0.54 -1.1
3,132,238 + Dsui_2928 0.59 +0.4
3,132,238 + Dsui_2928 0.59 -0.2
3,132,241 - Dsui_2928 0.60 +0.4
3,132,246 - +0.1
3,132,246 - Dsui_2928 0.60 -0.4
3,132,246 - +2.1
3,132,246 - +0.8
3,132,328 + -0.5
3,132,427 + Dsui_2928 0.78 +0.1
3,132,435 - Dsui_2928 0.79 +0.7
3,132,515 + Dsui_2928 0.87 +0.3
3,132,526 + +1.1
3,132,565 + -0.2
3,132,573 - -0.1
3,132,634 - -0.7
3,132,644 - +0.6
3,132,776 + +0.3
3,132,880 - +0.8
3,132,963 - Dsui_2929 0.48 -0.1
3,132,973 - Dsui_2929 0.50 -0.7
3,133,000 - Dsui_2929 0.57 -1.7
3,133,007 + Dsui_2929 0.59 +0.2
3,133,011 + Dsui_2929 0.60 -0.7
3,133,250 + -0.2
3,133,250 + +1.1
3,133,681 + Dsui_2930 0.27 +0.8
3,133,802 + Dsui_2930 0.36 -0.2
3,133,854 - +2.1
3,133,928 + +0.5

Or see this region's nucleotide sequence