Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2924 and Dsui_2925 are separated by 246 nucleotides Dsui_2925 and Dsui_2926 are separated by 98 nucleotides
Dsui_2924: Dsui_2924 - hypothetical protein, at 3,126,524 to 3,127,285
_2924
Dsui_2925: Dsui_2925 - propionate--CoA ligase, at 3,127,532 to 3,129,424
_2925
Dsui_2926: Dsui_2926 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,129,523 to 3,130,689
_2926
Position (kb)
3127
3128
3129
3130 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3126.619 kb on - strand, within Dsui_2924 at 3126.775 kb on - strand at 3126.942 kb on - strand, within Dsui_2924 at 3127.041 kb on + strand, within Dsui_2924 at 3127.548 kb on + strand at 3127.556 kb on - strand at 3127.556 kb on - strand at 3127.556 kb on - strand at 3127.785 kb on + strand, within Dsui_2925 at 3127.793 kb on - strand, within Dsui_2925 at 3127.840 kb on - strand, within Dsui_2925 at 3127.869 kb on - strand, within Dsui_2925 at 3127.874 kb on - strand, within Dsui_2925 at 3127.943 kb on + strand at 3127.995 kb on + strand, within Dsui_2925 at 3128.010 kb on + strand, within Dsui_2925 at 3128.018 kb on - strand, within Dsui_2925 at 3128.020 kb on + strand, within Dsui_2925 at 3128.117 kb on - strand, within Dsui_2925 at 3128.173 kb on - strand, within Dsui_2925 at 3128.188 kb on - strand, within Dsui_2925 at 3128.209 kb on + strand, within Dsui_2925 at 3128.233 kb on + strand, within Dsui_2925 at 3128.247 kb on + strand at 3128.292 kb on + strand, within Dsui_2925 at 3128.300 kb on - strand, within Dsui_2925 at 3128.342 kb on - strand, within Dsui_2925 at 3128.352 kb on + strand, within Dsui_2925 at 3128.434 kb on + strand, within Dsui_2925 at 3128.439 kb on + strand, within Dsui_2925 at 3128.544 kb on + strand, within Dsui_2925 at 3128.552 kb on - strand, within Dsui_2925 at 3128.552 kb on - strand, within Dsui_2925 at 3128.552 kb on - strand, within Dsui_2925 at 3128.552 kb on - strand, within Dsui_2925 at 3128.580 kb on - strand, within Dsui_2925 at 3128.588 kb on - strand, within Dsui_2925 at 3128.610 kb on + strand at 3128.658 kb on + strand, within Dsui_2925 at 3128.666 kb on - strand, within Dsui_2925 at 3128.673 kb on + strand, within Dsui_2925 at 3128.681 kb on - strand, within Dsui_2925 at 3128.700 kb on + strand, within Dsui_2925 at 3128.825 kb on - strand, within Dsui_2925 at 3128.956 kb on + strand at 3129.049 kb on - strand, within Dsui_2925 at 3129.167 kb on + strand at 3129.176 kb on - strand, within Dsui_2925 at 3129.221 kb on - strand, within Dsui_2925 at 3129.269 kb on + strand at 3129.309 kb on - strand at 3129.309 kb on - strand at 3129.323 kb on - strand at 3129.359 kb on - strand at 3129.409 kb on + strand at 3129.409 kb on - strand at 3129.417 kb on - strand at 3129.439 kb on - strand at 3129.454 kb on + strand at 3129.454 kb on + strand at 3129.456 kb on + strand at 3129.464 kb on - strand at 3129.489 kb on + strand at 3129.508 kb on - strand at 3129.561 kb on - strand at 3129.561 kb on - strand at 3129.561 kb on - strand at 3129.561 kb on - strand at 3129.562 kb on - strand at 3129.607 kb on - strand at 3129.646 kb on + strand, within Dsui_2926 at 3129.658 kb on + strand at 3129.661 kb on - strand, within Dsui_2926 at 3129.721 kb on - strand, within Dsui_2926 at 3129.721 kb on - strand, within Dsui_2926 at 3129.721 kb on - strand at 3129.833 kb on + strand, within Dsui_2926 at 3129.863 kb on + strand at 3129.976 kb on - strand, within Dsui_2926 at 3129.995 kb on - strand, within Dsui_2926 at 3130.019 kb on - strand, within Dsui_2926 at 3130.023 kb on + strand at 3130.125 kb on - strand, within Dsui_2926 at 3130.223 kb on + strand at 3130.242 kb on - strand, within Dsui_2926
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 3,126,619 - Dsui_2924 0.12 +0.4 3,126,775 - +1.1 3,126,942 - Dsui_2924 0.55 -0.9 3,127,041 + Dsui_2924 0.68 -0.4 3,127,548 + +1.6 3,127,556 - -0.5 3,127,556 - +0.5 3,127,556 - +0.1 3,127,785 + Dsui_2925 0.13 -0.9 3,127,793 - Dsui_2925 0.14 +0.1 3,127,840 - Dsui_2925 0.16 -2.0 3,127,869 - Dsui_2925 0.18 -0.8 3,127,874 - Dsui_2925 0.18 +0.0 3,127,943 + -0.2 3,127,995 + Dsui_2925 0.24 -0.7 3,128,010 + Dsui_2925 0.25 +1.1 3,128,018 - Dsui_2925 0.26 -0.8 3,128,020 + Dsui_2925 0.26 +0.1 3,128,117 - Dsui_2925 0.31 -0.1 3,128,173 - Dsui_2925 0.34 -0.0 3,128,188 - Dsui_2925 0.35 -0.1 3,128,209 + Dsui_2925 0.36 +0.4 3,128,233 + Dsui_2925 0.37 -1.1 3,128,247 + +1.1 3,128,292 + Dsui_2925 0.40 +0.8 3,128,300 - Dsui_2925 0.41 -0.3 3,128,342 - Dsui_2925 0.43 -0.8 3,128,352 + Dsui_2925 0.43 +0.9 3,128,434 + Dsui_2925 0.48 -1.0 3,128,439 + Dsui_2925 0.48 -1.3 3,128,544 + Dsui_2925 0.53 +0.1 3,128,552 - Dsui_2925 0.54 -1.7 3,128,552 - Dsui_2925 0.54 +1.1 3,128,552 - Dsui_2925 0.54 -0.7 3,128,552 - Dsui_2925 0.54 -0.1 3,128,580 - Dsui_2925 0.55 +0.1 3,128,588 - Dsui_2925 0.56 -0.4 3,128,610 + -0.2 3,128,658 + Dsui_2925 0.59 +0.1 3,128,666 - Dsui_2925 0.60 -0.6 3,128,673 + Dsui_2925 0.60 -1.6 3,128,681 - Dsui_2925 0.61 +0.1 3,128,700 + Dsui_2925 0.62 -0.6 3,128,825 - Dsui_2925 0.68 +0.4 3,128,956 + +1.1 3,129,049 - Dsui_2925 0.80 +0.5 3,129,167 + +1.1 3,129,176 - Dsui_2925 0.87 -0.1 3,129,221 - Dsui_2925 0.89 +0.2 3,129,269 + +2.1 3,129,309 - +0.1 3,129,309 - -0.8 3,129,323 - -0.0 3,129,359 - -0.4 3,129,409 + +2.1 3,129,409 - +0.1 3,129,417 - +0.3 3,129,439 - +0.8 3,129,454 + +0.5 3,129,454 + +2.1 3,129,456 + +1.1 3,129,464 - -0.9 3,129,489 + +1.1 3,129,508 - +0.9 3,129,561 - -1.5 3,129,561 - -0.2 3,129,561 - +0.8 3,129,561 - +1.0 3,129,562 - -0.3 3,129,607 - -0.6 3,129,646 + Dsui_2926 0.11 +0.3 3,129,658 + +1.1 3,129,661 - Dsui_2926 0.12 +0.4 3,129,721 - Dsui_2926 0.17 -0.5 3,129,721 - Dsui_2926 0.17 +0.3 3,129,721 - +0.5 3,129,833 + Dsui_2926 0.27 -0.8 3,129,863 + +0.5 3,129,976 - Dsui_2926 0.39 +0.2 3,129,995 - Dsui_2926 0.40 -0.2 3,130,019 - Dsui_2926 0.43 -0.5 3,130,023 + +1.1 3,130,125 - Dsui_2926 0.52 +0.1 3,130,223 + +1.1 3,130,242 - Dsui_2926 0.62 -0.7
Or see this region's nucleotide sequence