Strain Fitness in Dechlorosoma suillum PS around Dsui_2925

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2924 and Dsui_2925 are separated by 246 nucleotidesDsui_2925 and Dsui_2926 are separated by 98 nucleotides Dsui_2924: Dsui_2924 - hypothetical protein, at 3,126,524 to 3,127,285 _2924 Dsui_2925: Dsui_2925 - propionate--CoA ligase, at 3,127,532 to 3,129,424 _2925 Dsui_2926: Dsui_2926 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,129,523 to 3,130,689 _2926 Position (kb) 3127 3128 3129 3130Strain fitness (log2 ratio) -2 -1 0 1 2at 3126.619 kb on - strand, within Dsui_2924at 3126.775 kb on - strandat 3126.942 kb on - strand, within Dsui_2924at 3127.041 kb on + strand, within Dsui_2924at 3127.548 kb on + strandat 3127.556 kb on - strandat 3127.556 kb on - strandat 3127.556 kb on - strandat 3127.785 kb on + strand, within Dsui_2925at 3127.793 kb on - strand, within Dsui_2925at 3127.840 kb on - strand, within Dsui_2925at 3127.869 kb on - strand, within Dsui_2925at 3127.874 kb on - strand, within Dsui_2925at 3127.943 kb on + strandat 3127.995 kb on + strand, within Dsui_2925at 3128.010 kb on + strand, within Dsui_2925at 3128.018 kb on - strand, within Dsui_2925at 3128.020 kb on + strand, within Dsui_2925at 3128.117 kb on - strand, within Dsui_2925at 3128.173 kb on - strand, within Dsui_2925at 3128.188 kb on - strand, within Dsui_2925at 3128.209 kb on + strand, within Dsui_2925at 3128.233 kb on + strand, within Dsui_2925at 3128.247 kb on + strandat 3128.292 kb on + strand, within Dsui_2925at 3128.300 kb on - strand, within Dsui_2925at 3128.342 kb on - strand, within Dsui_2925at 3128.352 kb on + strand, within Dsui_2925at 3128.434 kb on + strand, within Dsui_2925at 3128.439 kb on + strand, within Dsui_2925at 3128.544 kb on + strand, within Dsui_2925at 3128.552 kb on - strand, within Dsui_2925at 3128.552 kb on - strand, within Dsui_2925at 3128.552 kb on - strand, within Dsui_2925at 3128.552 kb on - strand, within Dsui_2925at 3128.580 kb on - strand, within Dsui_2925at 3128.588 kb on - strand, within Dsui_2925at 3128.610 kb on + strandat 3128.658 kb on + strand, within Dsui_2925at 3128.666 kb on - strand, within Dsui_2925at 3128.673 kb on + strand, within Dsui_2925at 3128.681 kb on - strand, within Dsui_2925at 3128.700 kb on + strand, within Dsui_2925at 3128.825 kb on - strand, within Dsui_2925at 3128.956 kb on + strandat 3129.049 kb on - strand, within Dsui_2925at 3129.167 kb on + strandat 3129.176 kb on - strand, within Dsui_2925at 3129.221 kb on - strand, within Dsui_2925at 3129.269 kb on + strandat 3129.309 kb on - strandat 3129.309 kb on - strandat 3129.323 kb on - strandat 3129.359 kb on - strandat 3129.409 kb on + strandat 3129.409 kb on - strandat 3129.417 kb on - strandat 3129.439 kb on - strandat 3129.454 kb on + strandat 3129.454 kb on + strandat 3129.456 kb on + strandat 3129.464 kb on - strandat 3129.489 kb on + strandat 3129.508 kb on - strandat 3129.561 kb on - strandat 3129.561 kb on - strandat 3129.561 kb on - strandat 3129.561 kb on - strandat 3129.562 kb on - strandat 3129.607 kb on - strandat 3129.646 kb on + strand, within Dsui_2926at 3129.658 kb on + strandat 3129.661 kb on - strand, within Dsui_2926at 3129.721 kb on - strand, within Dsui_2926at 3129.721 kb on - strand, within Dsui_2926at 3129.721 kb on - strandat 3129.833 kb on + strand, within Dsui_2926at 3129.863 kb on + strandat 3129.976 kb on - strand, within Dsui_2926at 3129.995 kb on - strand, within Dsui_2926at 3130.019 kb on - strand, within Dsui_2926at 3130.023 kb on + strandat 3130.125 kb on - strand, within Dsui_2926at 3130.223 kb on + strandat 3130.242 kb on - strand, within Dsui_2926

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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3,126,619 - Dsui_2924 0.12 +0.4
3,126,775 - +1.1
3,126,942 - Dsui_2924 0.55 -0.9
3,127,041 + Dsui_2924 0.68 -0.4
3,127,548 + +1.6
3,127,556 - -0.5
3,127,556 - +0.5
3,127,556 - +0.1
3,127,785 + Dsui_2925 0.13 -0.9
3,127,793 - Dsui_2925 0.14 +0.1
3,127,840 - Dsui_2925 0.16 -2.0
3,127,869 - Dsui_2925 0.18 -0.8
3,127,874 - Dsui_2925 0.18 +0.0
3,127,943 + -0.2
3,127,995 + Dsui_2925 0.24 -0.7
3,128,010 + Dsui_2925 0.25 +1.1
3,128,018 - Dsui_2925 0.26 -0.8
3,128,020 + Dsui_2925 0.26 +0.1
3,128,117 - Dsui_2925 0.31 -0.1
3,128,173 - Dsui_2925 0.34 -0.0
3,128,188 - Dsui_2925 0.35 -0.1
3,128,209 + Dsui_2925 0.36 +0.4
3,128,233 + Dsui_2925 0.37 -1.1
3,128,247 + +1.1
3,128,292 + Dsui_2925 0.40 +0.8
3,128,300 - Dsui_2925 0.41 -0.3
3,128,342 - Dsui_2925 0.43 -0.8
3,128,352 + Dsui_2925 0.43 +0.9
3,128,434 + Dsui_2925 0.48 -1.0
3,128,439 + Dsui_2925 0.48 -1.3
3,128,544 + Dsui_2925 0.53 +0.1
3,128,552 - Dsui_2925 0.54 -1.7
3,128,552 - Dsui_2925 0.54 +1.1
3,128,552 - Dsui_2925 0.54 -0.7
3,128,552 - Dsui_2925 0.54 -0.1
3,128,580 - Dsui_2925 0.55 +0.1
3,128,588 - Dsui_2925 0.56 -0.4
3,128,610 + -0.2
3,128,658 + Dsui_2925 0.59 +0.1
3,128,666 - Dsui_2925 0.60 -0.6
3,128,673 + Dsui_2925 0.60 -1.6
3,128,681 - Dsui_2925 0.61 +0.1
3,128,700 + Dsui_2925 0.62 -0.6
3,128,825 - Dsui_2925 0.68 +0.4
3,128,956 + +1.1
3,129,049 - Dsui_2925 0.80 +0.5
3,129,167 + +1.1
3,129,176 - Dsui_2925 0.87 -0.1
3,129,221 - Dsui_2925 0.89 +0.2
3,129,269 + +2.1
3,129,309 - +0.1
3,129,309 - -0.8
3,129,323 - -0.0
3,129,359 - -0.4
3,129,409 + +2.1
3,129,409 - +0.1
3,129,417 - +0.3
3,129,439 - +0.8
3,129,454 + +0.5
3,129,454 + +2.1
3,129,456 + +1.1
3,129,464 - -0.9
3,129,489 + +1.1
3,129,508 - +0.9
3,129,561 - -1.5
3,129,561 - -0.2
3,129,561 - +0.8
3,129,561 - +1.0
3,129,562 - -0.3
3,129,607 - -0.6
3,129,646 + Dsui_2926 0.11 +0.3
3,129,658 + +1.1
3,129,661 - Dsui_2926 0.12 +0.4
3,129,721 - Dsui_2926 0.17 -0.5
3,129,721 - Dsui_2926 0.17 +0.3
3,129,721 - +0.5
3,129,833 + Dsui_2926 0.27 -0.8
3,129,863 + +0.5
3,129,976 - Dsui_2926 0.39 +0.2
3,129,995 - Dsui_2926 0.40 -0.2
3,130,019 - Dsui_2926 0.43 -0.5
3,130,023 + +1.1
3,130,125 - Dsui_2926 0.52 +0.1
3,130,223 + +1.1
3,130,242 - Dsui_2926 0.62 -0.7

Or see this region's nucleotide sequence