Strain Fitness in Dechlorosoma suillum PS around Dsui_2865

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2864 and Dsui_2865 overlap by 4 nucleotidesDsui_2865 and Dsui_2866 are separated by 1 nucleotides Dsui_2864: Dsui_2864 - signal transduction histidine kinase, at 3,055,598 to 3,058,393 _2864 Dsui_2865: Dsui_2865 - hypothetical protein, at 3,058,390 to 3,058,920 _2865 Dsui_2866: Dsui_2866 - outer membrane receptor for ferrienterochelin and colicins, at 3,058,922 to 3,060,874 _2866 Position (kb) 3058 3059Strain fitness (log2 ratio) -1 0 1 2 3at 3057.445 kb on + strandat 3057.454 kb on - strand, within Dsui_2864at 3057.463 kb on + strand, within Dsui_2864at 3057.466 kb on - strand, within Dsui_2864at 3057.466 kb on - strandat 3057.593 kb on - strandat 3057.721 kb on + strand, within Dsui_2864at 3058.095 kb on - strand, within Dsui_2864at 3058.121 kb on + strandat 3058.179 kb on + strandat 3058.323 kb on - strandat 3058.373 kb on - strandat 3058.399 kb on - strandat 3058.515 kb on + strand, within Dsui_2865at 3058.548 kb on - strand, within Dsui_2865at 3058.594 kb on + strandat 3058.644 kb on + strandat 3058.652 kb on - strandat 3058.668 kb on - strandat 3058.675 kb on + strandat 3058.718 kb on - strand, within Dsui_2865at 3058.781 kb on - strand, within Dsui_2865at 3058.883 kb on - strandat 3058.972 kb on + strandat 3059.010 kb on + strandat 3059.108 kb on - strandat 3059.164 kb on + strand, within Dsui_2866at 3059.439 kb on - strand, within Dsui_2866at 3059.439 kb on - strand, within Dsui_2866at 3059.484 kb on - strand, within Dsui_2866at 3059.569 kb on - strand, within Dsui_2866at 3059.915 kb on - strand, within Dsui_2866

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
remove
3,057,445 + +2.1
3,057,454 - Dsui_2864 0.66 +0.3
3,057,463 + Dsui_2864 0.67 +0.2
3,057,466 - Dsui_2864 0.67 -0.0
3,057,466 - +0.9
3,057,593 - +3.1
3,057,721 + Dsui_2864 0.76 -0.9
3,058,095 - Dsui_2864 0.89 -0.2
3,058,121 + +2.1
3,058,179 + +1.1
3,058,323 - +0.5
3,058,373 - -1.7
3,058,399 - +1.1
3,058,515 + Dsui_2865 0.24 +0.3
3,058,548 - Dsui_2865 0.30 +0.1
3,058,594 + +1.1
3,058,644 + +3.1
3,058,652 - +3.7
3,058,668 - +1.3
3,058,675 + +1.5
3,058,718 - Dsui_2865 0.62 -0.0
3,058,781 - Dsui_2865 0.74 +0.0
3,058,883 - -0.3
3,058,972 + +0.9
3,059,010 + +1.1
3,059,108 - -1.5
3,059,164 + Dsui_2866 0.12 -0.7
3,059,439 - Dsui_2866 0.26 -1.0
3,059,439 - Dsui_2866 0.26 -1.0
3,059,484 - Dsui_2866 0.29 +0.5
3,059,569 - Dsui_2866 0.33 -0.4
3,059,915 - Dsui_2866 0.51 -0.1

Or see this region's nucleotide sequence