Strain Fitness in Dechlorosoma suillum PS around Dsui_2864

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2863 and Dsui_2864 are separated by 123 nucleotidesDsui_2864 and Dsui_2865 overlap by 4 nucleotidesDsui_2865 and Dsui_2866 are separated by 1 nucleotides Dsui_2863: Dsui_2863 - lysyl-tRNA synthetase (class II), at 3,053,972 to 3,055,474 _2863 Dsui_2864: Dsui_2864 - signal transduction histidine kinase, at 3,055,598 to 3,058,393 _2864 Dsui_2865: Dsui_2865 - hypothetical protein, at 3,058,390 to 3,058,920 _2865 Dsui_2866: Dsui_2866 - outer membrane receptor for ferrienterochelin and colicins, at 3,058,922 to 3,060,874 _2866 Position (kb) 3055 3056 3057 3058 3059Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3055.625 kb on + strandat 3055.655 kb on - strandat 3055.876 kb on + strandat 3056.037 kb on - strand, within Dsui_2864at 3056.047 kb on + strandat 3056.055 kb on + strand, within Dsui_2864at 3056.055 kb on + strandat 3056.187 kb on - strand, within Dsui_2864at 3056.276 kb on + strandat 3056.480 kb on + strand, within Dsui_2864at 3056.493 kb on - strand, within Dsui_2864at 3056.538 kb on + strand, within Dsui_2864at 3056.663 kb on - strand, within Dsui_2864at 3056.776 kb on + strandat 3056.832 kb on + strandat 3056.846 kb on - strandat 3056.908 kb on - strand, within Dsui_2864at 3056.949 kb on - strand, within Dsui_2864at 3056.960 kb on + strand, within Dsui_2864at 3056.960 kb on + strand, within Dsui_2864at 3057.110 kb on - strandat 3057.151 kb on + strandat 3057.252 kb on - strandat 3057.345 kb on - strand, within Dsui_2864at 3057.354 kb on + strandat 3057.364 kb on + strandat 3057.372 kb on - strand, within Dsui_2864at 3057.445 kb on + strandat 3057.454 kb on - strand, within Dsui_2864at 3057.463 kb on + strand, within Dsui_2864at 3057.466 kb on - strand, within Dsui_2864at 3057.466 kb on - strandat 3057.593 kb on - strandat 3057.721 kb on + strand, within Dsui_2864at 3058.095 kb on - strand, within Dsui_2864at 3058.121 kb on + strandat 3058.179 kb on + strandat 3058.323 kb on - strandat 3058.373 kb on - strandat 3058.399 kb on - strandat 3058.515 kb on + strand, within Dsui_2865at 3058.548 kb on - strand, within Dsui_2865at 3058.594 kb on + strandat 3058.644 kb on + strandat 3058.652 kb on - strandat 3058.668 kb on - strandat 3058.675 kb on + strandat 3058.718 kb on - strand, within Dsui_2865at 3058.781 kb on - strand, within Dsui_2865at 3058.883 kb on - strandat 3058.972 kb on + strandat 3059.010 kb on + strandat 3059.108 kb on - strandat 3059.164 kb on + strand, within Dsui_2866

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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3,055,625 + -0.0
3,055,655 - -0.5
3,055,876 + +1.1
3,056,037 - Dsui_2864 0.16 -1.3
3,056,047 + +2.1
3,056,055 + Dsui_2864 0.16 -0.0
3,056,055 + +0.5
3,056,187 - Dsui_2864 0.21 +0.3
3,056,276 + +2.1
3,056,480 + Dsui_2864 0.32 -1.7
3,056,493 - Dsui_2864 0.32 +1.1
3,056,538 + Dsui_2864 0.34 -1.5
3,056,663 - Dsui_2864 0.38 -2.3
3,056,776 + +1.1
3,056,832 + -0.2
3,056,846 - -0.2
3,056,908 - Dsui_2864 0.47 -2.7
3,056,949 - Dsui_2864 0.48 -0.2
3,056,960 + Dsui_2864 0.49 +0.9
3,056,960 + Dsui_2864 0.49 +0.3
3,057,110 - +1.1
3,057,151 + +1.1
3,057,252 - -0.5
3,057,345 - Dsui_2864 0.62 -1.3
3,057,354 + +1.1
3,057,364 + -0.5
3,057,372 - Dsui_2864 0.63 -0.8
3,057,445 + +2.1
3,057,454 - Dsui_2864 0.66 +0.3
3,057,463 + Dsui_2864 0.67 +0.2
3,057,466 - Dsui_2864 0.67 -0.0
3,057,466 - +0.9
3,057,593 - +3.1
3,057,721 + Dsui_2864 0.76 -0.9
3,058,095 - Dsui_2864 0.89 -0.2
3,058,121 + +2.1
3,058,179 + +1.1
3,058,323 - +0.5
3,058,373 - -1.7
3,058,399 - +1.1
3,058,515 + Dsui_2865 0.24 +0.3
3,058,548 - Dsui_2865 0.30 +0.1
3,058,594 + +1.1
3,058,644 + +3.1
3,058,652 - +3.7
3,058,668 - +1.3
3,058,675 + +1.5
3,058,718 - Dsui_2865 0.62 -0.0
3,058,781 - Dsui_2865 0.74 +0.0
3,058,883 - -0.3
3,058,972 + +0.9
3,059,010 + +1.1
3,059,108 - -1.5
3,059,164 + Dsui_2866 0.12 -0.7

Or see this region's nucleotide sequence