Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2863 and Dsui_2864 are separated by 123 nucleotides Dsui_2864 and Dsui_2865 overlap by 4 nucleotides Dsui_2865 and Dsui_2866 are separated by 1 nucleotides
Dsui_2863: Dsui_2863 - lysyl-tRNA synthetase (class II), at 3,053,972 to 3,055,474
_2863
Dsui_2864: Dsui_2864 - signal transduction histidine kinase, at 3,055,598 to 3,058,393
_2864
Dsui_2865: Dsui_2865 - hypothetical protein, at 3,058,390 to 3,058,920
_2865
Dsui_2866: Dsui_2866 - outer membrane receptor for ferrienterochelin and colicins, at 3,058,922 to 3,060,874
_2866
Position (kb)
3055
3056
3057
3058
3059 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3055.625 kb on + strand at 3055.655 kb on - strand at 3055.876 kb on + strand at 3056.037 kb on - strand, within Dsui_2864 at 3056.047 kb on + strand at 3056.055 kb on + strand, within Dsui_2864 at 3056.055 kb on + strand at 3056.187 kb on - strand, within Dsui_2864 at 3056.276 kb on + strand at 3056.480 kb on + strand, within Dsui_2864 at 3056.493 kb on - strand, within Dsui_2864 at 3056.538 kb on + strand, within Dsui_2864 at 3056.663 kb on - strand, within Dsui_2864 at 3056.776 kb on + strand at 3056.832 kb on + strand at 3056.846 kb on - strand at 3056.908 kb on - strand, within Dsui_2864 at 3056.949 kb on - strand, within Dsui_2864 at 3056.960 kb on + strand, within Dsui_2864 at 3056.960 kb on + strand, within Dsui_2864 at 3057.110 kb on - strand at 3057.151 kb on + strand at 3057.252 kb on - strand at 3057.345 kb on - strand, within Dsui_2864 at 3057.354 kb on + strand at 3057.364 kb on + strand at 3057.372 kb on - strand, within Dsui_2864 at 3057.445 kb on + strand at 3057.454 kb on - strand, within Dsui_2864 at 3057.463 kb on + strand, within Dsui_2864 at 3057.466 kb on - strand, within Dsui_2864 at 3057.466 kb on - strand at 3057.593 kb on - strand at 3057.721 kb on + strand, within Dsui_2864 at 3058.095 kb on - strand, within Dsui_2864 at 3058.121 kb on + strand at 3058.179 kb on + strand at 3058.323 kb on - strand at 3058.373 kb on - strand at 3058.399 kb on - strand at 3058.515 kb on + strand, within Dsui_2865 at 3058.548 kb on - strand, within Dsui_2865 at 3058.594 kb on + strand at 3058.644 kb on + strand at 3058.652 kb on - strand at 3058.668 kb on - strand at 3058.675 kb on + strand at 3058.718 kb on - strand, within Dsui_2865 at 3058.781 kb on - strand, within Dsui_2865 at 3058.883 kb on - strand at 3058.972 kb on + strand at 3059.010 kb on + strand at 3059.108 kb on - strand at 3059.164 kb on + strand, within Dsui_2866
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 3,055,625 + -0.0 3,055,655 - -0.5 3,055,876 + +1.1 3,056,037 - Dsui_2864 0.16 -1.3 3,056,047 + +2.1 3,056,055 + Dsui_2864 0.16 -0.0 3,056,055 + +0.5 3,056,187 - Dsui_2864 0.21 +0.3 3,056,276 + +2.1 3,056,480 + Dsui_2864 0.32 -1.7 3,056,493 - Dsui_2864 0.32 +1.1 3,056,538 + Dsui_2864 0.34 -1.5 3,056,663 - Dsui_2864 0.38 -2.3 3,056,776 + +1.1 3,056,832 + -0.2 3,056,846 - -0.2 3,056,908 - Dsui_2864 0.47 -2.7 3,056,949 - Dsui_2864 0.48 -0.2 3,056,960 + Dsui_2864 0.49 +0.9 3,056,960 + Dsui_2864 0.49 +0.3 3,057,110 - +1.1 3,057,151 + +1.1 3,057,252 - -0.5 3,057,345 - Dsui_2864 0.62 -1.3 3,057,354 + +1.1 3,057,364 + -0.5 3,057,372 - Dsui_2864 0.63 -0.8 3,057,445 + +2.1 3,057,454 - Dsui_2864 0.66 +0.3 3,057,463 + Dsui_2864 0.67 +0.2 3,057,466 - Dsui_2864 0.67 -0.0 3,057,466 - +0.9 3,057,593 - +3.1 3,057,721 + Dsui_2864 0.76 -0.9 3,058,095 - Dsui_2864 0.89 -0.2 3,058,121 + +2.1 3,058,179 + +1.1 3,058,323 - +0.5 3,058,373 - -1.7 3,058,399 - +1.1 3,058,515 + Dsui_2865 0.24 +0.3 3,058,548 - Dsui_2865 0.30 +0.1 3,058,594 + +1.1 3,058,644 + +3.1 3,058,652 - +3.7 3,058,668 - +1.3 3,058,675 + +1.5 3,058,718 - Dsui_2865 0.62 -0.0 3,058,781 - Dsui_2865 0.74 +0.0 3,058,883 - -0.3 3,058,972 + +0.9 3,059,010 + +1.1 3,059,108 - -1.5 3,059,164 + Dsui_2866 0.12 -0.7
Or see this region's nucleotide sequence