Strain Fitness in Dechlorosoma suillum PS around Dsui_2747

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2746 and Dsui_2747 are separated by 102 nucleotidesDsui_2747 and Dsui_2748 are separated by 92 nucleotidesDsui_2748 and Dsui_2749 are separated by 122 nucleotides Dsui_2746: Dsui_2746 - ATP-binding cassette protein, ChvD family, at 2,901,236 to 2,902,900 _2746 Dsui_2747: Dsui_2747 - uncharacterized integral membrane protein, at 2,903,003 to 2,903,860 _2747 Dsui_2748: Dsui_2748 - hypothetical protein, at 2,903,953 to 2,904,237 _2748 Dsui_2749: Dsui_2749 - putative acyltransferase, at 2,904,360 to 2,905,478 _2749 Position (kb) 2903 2904Strain fitness (log2 ratio) -1 0 1 2at 2902.020 kb on - strand, within Dsui_2746at 2902.027 kb on + strand, within Dsui_2746at 2902.068 kb on + strand, within Dsui_2746at 2902.171 kb on + strand, within Dsui_2746at 2902.186 kb on - strand, within Dsui_2746at 2902.225 kb on + strand, within Dsui_2746at 2902.317 kb on + strand, within Dsui_2746at 2902.352 kb on + strand, within Dsui_2746at 2902.401 kb on + strand, within Dsui_2746at 2902.406 kb on + strand, within Dsui_2746at 2902.406 kb on + strand, within Dsui_2746at 2902.406 kb on + strand, within Dsui_2746at 2902.432 kb on + strand, within Dsui_2746at 2902.464 kb on + strand, within Dsui_2746at 2902.473 kb on + strand, within Dsui_2746at 2902.595 kb on - strand, within Dsui_2746at 2902.752 kb on + strandat 2902.755 kb on + strandat 2902.770 kb on - strandat 2902.816 kb on + strandat 2902.819 kb on + strandat 2902.864 kb on + strandat 2902.864 kb on + strandat 2902.864 kb on + strandat 2902.872 kb on - strandat 2902.872 kb on - strandat 2902.888 kb on + strandat 2902.922 kb on - strandat 2902.958 kb on + strandat 2903.016 kb on - strandat 2903.018 kb on + strandat 2903.174 kb on - strand, within Dsui_2747at 2903.189 kb on - strand, within Dsui_2747at 2903.313 kb on - strand, within Dsui_2747at 2903.316 kb on + strand, within Dsui_2747at 2903.348 kb on + strand, within Dsui_2747at 2903.361 kb on + strand, within Dsui_2747at 2903.369 kb on - strand, within Dsui_2747at 2903.374 kb on - strand, within Dsui_2747at 2903.460 kb on - strandat 2903.531 kb on - strand, within Dsui_2747at 2903.615 kb on - strand, within Dsui_2747at 2903.658 kb on + strand, within Dsui_2747at 2903.666 kb on - strand, within Dsui_2747at 2903.666 kb on - strand, within Dsui_2747at 2903.666 kb on - strand, within Dsui_2747at 2903.666 kb on - strand, within Dsui_2747at 2903.714 kb on - strand, within Dsui_2747at 2903.754 kb on + strand, within Dsui_2747at 2903.784 kb on - strandat 2903.792 kb on + strandat 2903.820 kb on + strandat 2903.820 kb on + strandat 2903.820 kb on + strandat 2903.831 kb on + strandat 2903.846 kb on - strandat 2903.854 kb on + strandat 2903.867 kb on - strandat 2903.874 kb on - strandat 2903.932 kb on + strandat 2903.940 kb on - strandat 2903.940 kb on - strandat 2903.940 kb on - strandat 2903.940 kb on - strandat 2903.959 kb on - strandat 2903.987 kb on + strand, within Dsui_2748at 2903.987 kb on + strandat 2903.987 kb on + strand, within Dsui_2748at 2904.014 kb on + strand, within Dsui_2748at 2904.124 kb on + strand, within Dsui_2748at 2904.124 kb on + strandat 2904.151 kb on + strand, within Dsui_2748at 2904.286 kb on + strandat 2904.291 kb on - strandat 2904.341 kb on + strandat 2904.380 kb on + strandat 2904.388 kb on + strandat 2904.471 kb on + strandat 2904.471 kb on + strandat 2904.479 kb on - strand, within Dsui_2749at 2904.532 kb on + strand, within Dsui_2749at 2904.636 kb on - strand, within Dsui_2749at 2904.669 kb on + strand, within Dsui_2749at 2904.677 kb on - strand, within Dsui_2749at 2904.677 kb on - strand, within Dsui_2749at 2904.677 kb on - strand, within Dsui_2749at 2904.677 kb on - strand, within Dsui_2749at 2904.810 kb on - strand, within Dsui_2749

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
remove
2,902,020 - Dsui_2746 0.47 +0.4
2,902,027 + Dsui_2746 0.48 +0.1
2,902,068 + Dsui_2746 0.50 -1.2
2,902,171 + Dsui_2746 0.56 -0.5
2,902,186 - Dsui_2746 0.57 -1.2
2,902,225 + Dsui_2746 0.59 -1.0
2,902,317 + Dsui_2746 0.65 -0.9
2,902,352 + Dsui_2746 0.67 -0.4
2,902,401 + Dsui_2746 0.70 -1.4
2,902,406 + Dsui_2746 0.70 -0.5
2,902,406 + Dsui_2746 0.70 -0.3
2,902,406 + Dsui_2746 0.70 -0.8
2,902,432 + Dsui_2746 0.72 -0.4
2,902,464 + Dsui_2746 0.74 -0.6
2,902,473 + Dsui_2746 0.74 -0.4
2,902,595 - Dsui_2746 0.82 +0.5
2,902,752 + +0.1
2,902,755 + -0.7
2,902,770 - -0.0
2,902,816 + +0.1
2,902,819 + -0.4
2,902,864 + -0.1
2,902,864 + -0.1
2,902,864 + +1.3
2,902,872 - -0.4
2,902,872 - -1.1
2,902,888 + +0.1
2,902,922 - +0.8
2,902,958 + -1.5
2,903,016 - -0.7
2,903,018 + -0.5
2,903,174 - Dsui_2747 0.20 -0.5
2,903,189 - Dsui_2747 0.22 +0.0
2,903,313 - Dsui_2747 0.36 -0.6
2,903,316 + Dsui_2747 0.36 -0.1
2,903,348 + Dsui_2747 0.40 +0.6
2,903,361 + Dsui_2747 0.42 -0.9
2,903,369 - Dsui_2747 0.43 -0.6
2,903,374 - Dsui_2747 0.43 -1.0
2,903,460 - -0.2
2,903,531 - Dsui_2747 0.62 -1.2
2,903,615 - Dsui_2747 0.71 -1.1
2,903,658 + Dsui_2747 0.76 -0.8
2,903,666 - Dsui_2747 0.77 -0.7
2,903,666 - Dsui_2747 0.77 -1.3
2,903,666 - Dsui_2747 0.77 -0.4
2,903,666 - Dsui_2747 0.77 +0.5
2,903,714 - Dsui_2747 0.83 -0.0
2,903,754 + Dsui_2747 0.88 -0.4
2,903,784 - +0.2
2,903,792 + -0.2
2,903,820 + -0.1
2,903,820 + -0.1
2,903,820 + +0.4
2,903,831 + -1.1
2,903,846 - +0.6
2,903,854 + -0.2
2,903,867 - -1.7
2,903,874 - -0.4
2,903,932 + -0.5
2,903,940 - +0.0
2,903,940 - -0.1
2,903,940 - -0.4
2,903,940 - +0.1
2,903,959 - -0.0
2,903,987 + Dsui_2748 0.12 +1.3
2,903,987 + +2.1
2,903,987 + Dsui_2748 0.12 +0.2
2,904,014 + Dsui_2748 0.21 +0.6
2,904,124 + Dsui_2748 0.60 -0.8
2,904,124 + -0.2
2,904,151 + Dsui_2748 0.69 +0.8
2,904,286 + +0.2
2,904,291 - +0.1
2,904,341 + +0.0
2,904,380 + -0.6
2,904,388 + -0.2
2,904,471 + +0.1
2,904,471 + -0.4
2,904,479 - Dsui_2749 0.11 -0.5
2,904,532 + Dsui_2749 0.15 -0.6
2,904,636 - Dsui_2749 0.25 -0.2
2,904,669 + Dsui_2749 0.28 -0.3
2,904,677 - Dsui_2749 0.28 -0.4
2,904,677 - Dsui_2749 0.28 +0.2
2,904,677 - Dsui_2749 0.28 +0.1
2,904,677 - Dsui_2749 0.28 -0.7
2,904,810 - Dsui_2749 0.40 -0.5

Or see this region's nucleotide sequence