Strain Fitness in Dechlorosoma suillum PS around Dsui_2745

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2743 and Dsui_2744 are separated by 135 nucleotidesDsui_2744 and Dsui_2745 are separated by 97 nucleotidesDsui_2745 and Dsui_2746 are separated by 209 nucleotides Dsui_2743: Dsui_2743 - Integral membrane protein CcmA involved in cell shape determination, at 2,898,011 to 2,898,619 _2743 Dsui_2744: Dsui_2744 - Protein of unknown function (DUF1236), at 2,898,755 to 2,899,300 _2744 Dsui_2745: Dsui_2745 - methyl-accepting chemotaxis protein, at 2,899,398 to 2,901,026 _2745 Dsui_2746: Dsui_2746 - ATP-binding cassette protein, ChvD family, at 2,901,236 to 2,902,900 _2746 Position (kb) 2899 2900 2901 2902Strain fitness (log2 ratio) -2 -1 0 1 2at 2898.446 kb on + strandat 2898.582 kb on + strandat 2898.621 kb on - strandat 2898.728 kb on + strandat 2898.728 kb on + strandat 2898.801 kb on + strandat 2898.801 kb on + strandat 2898.883 kb on + strand, within Dsui_2744at 2898.904 kb on - strandat 2899.163 kb on - strand, within Dsui_2744at 2899.210 kb on - strandat 2899.230 kb on + strand, within Dsui_2744at 2899.260 kb on + strandat 2899.445 kb on + strandat 2899.627 kb on - strand, within Dsui_2745at 2900.133 kb on + strand, within Dsui_2745at 2900.149 kb on + strandat 2900.670 kb on - strand, within Dsui_2745at 2900.693 kb on + strand, within Dsui_2745at 2900.786 kb on + strand, within Dsui_2745at 2900.810 kb on + strandat 2900.960 kb on - strandat 2901.211 kb on + strandat 2901.212 kb on + strandat 2901.221 kb on + strandat 2901.229 kb on - strandat 2901.268 kb on + strandat 2901.281 kb on - strandat 2901.350 kb on + strandat 2901.385 kb on + strandat 2901.422 kb on + strand, within Dsui_2746at 2901.430 kb on - strandat 2901.553 kb on + strand, within Dsui_2746at 2901.553 kb on + strand, within Dsui_2746at 2901.759 kb on - strand, within Dsui_2746at 2901.831 kb on + strand, within Dsui_2746at 2901.839 kb on - strand, within Dsui_2746at 2901.943 kb on - strand, within Dsui_2746at 2902.020 kb on - strand, within Dsui_2746

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,898,446 + +2.1
2,898,582 + -0.2
2,898,621 - +2.1
2,898,728 + -0.8
2,898,728 + +1.3
2,898,801 + -0.5
2,898,801 + -1.0
2,898,883 + Dsui_2744 0.23 -0.6
2,898,904 - +2.1
2,899,163 - Dsui_2744 0.75 +1.0
2,899,210 - -0.5
2,899,230 + Dsui_2744 0.87 -0.6
2,899,260 + -2.6
2,899,445 + +0.1
2,899,627 - Dsui_2745 0.14 -0.6
2,900,133 + Dsui_2745 0.45 -1.1
2,900,149 + +1.1
2,900,670 - Dsui_2745 0.78 -1.1
2,900,693 + Dsui_2745 0.79 -1.5
2,900,786 + Dsui_2745 0.85 -0.5
2,900,810 + +0.5
2,900,960 - +0.5
2,901,211 + -0.2
2,901,212 + -0.4
2,901,221 + -0.5
2,901,229 - +0.5
2,901,268 + -0.6
2,901,281 - -1.5
2,901,350 + -0.2
2,901,385 + -0.6
2,901,422 + Dsui_2746 0.11 -0.5
2,901,430 - +0.8
2,901,553 + Dsui_2746 0.19 -0.4
2,901,553 + Dsui_2746 0.19 -1.1
2,901,759 - Dsui_2746 0.31 -0.9
2,901,831 + Dsui_2746 0.36 -0.3
2,901,839 - Dsui_2746 0.36 -0.5
2,901,943 - Dsui_2746 0.42 -0.1
2,902,020 - Dsui_2746 0.47 +0.4

Or see this region's nucleotide sequence