Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2743 and Dsui_2744 are separated by 135 nucleotides Dsui_2744 and Dsui_2745 are separated by 97 nucleotides Dsui_2745 and Dsui_2746 are separated by 209 nucleotides
Dsui_2743: Dsui_2743 - Integral membrane protein CcmA involved in cell shape determination, at 2,898,011 to 2,898,619
_2743
Dsui_2744: Dsui_2744 - Protein of unknown function (DUF1236), at 2,898,755 to 2,899,300
_2744
Dsui_2745: Dsui_2745 - methyl-accepting chemotaxis protein, at 2,899,398 to 2,901,026
_2745
Dsui_2746: Dsui_2746 - ATP-binding cassette protein, ChvD family, at 2,901,236 to 2,902,900
_2746
Position (kb)
2899
2900
2901
2902 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2898.446 kb on + strand at 2898.582 kb on + strand at 2898.621 kb on - strand at 2898.728 kb on + strand at 2898.728 kb on + strand at 2898.801 kb on + strand at 2898.801 kb on + strand at 2898.883 kb on + strand, within Dsui_2744 at 2898.904 kb on - strand at 2899.163 kb on - strand, within Dsui_2744 at 2899.210 kb on - strand at 2899.230 kb on + strand, within Dsui_2744 at 2899.260 kb on + strand at 2899.445 kb on + strand at 2899.627 kb on - strand, within Dsui_2745 at 2900.133 kb on + strand, within Dsui_2745 at 2900.149 kb on + strand at 2900.670 kb on - strand, within Dsui_2745 at 2900.693 kb on + strand, within Dsui_2745 at 2900.786 kb on + strand, within Dsui_2745 at 2900.810 kb on + strand at 2900.960 kb on - strand at 2901.211 kb on + strand at 2901.212 kb on + strand at 2901.221 kb on + strand at 2901.229 kb on - strand at 2901.268 kb on + strand at 2901.281 kb on - strand at 2901.350 kb on + strand at 2901.385 kb on + strand at 2901.422 kb on + strand, within Dsui_2746 at 2901.430 kb on - strand at 2901.553 kb on + strand, within Dsui_2746 at 2901.553 kb on + strand, within Dsui_2746 at 2901.759 kb on - strand, within Dsui_2746 at 2901.831 kb on + strand, within Dsui_2746 at 2901.839 kb on - strand, within Dsui_2746 at 2901.943 kb on - strand, within Dsui_2746 at 2902.020 kb on - strand, within Dsui_2746
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,898,446 + +2.1 2,898,582 + -0.2 2,898,621 - +2.1 2,898,728 + -0.8 2,898,728 + +1.3 2,898,801 + -0.5 2,898,801 + -1.0 2,898,883 + Dsui_2744 0.23 -0.6 2,898,904 - +2.1 2,899,163 - Dsui_2744 0.75 +1.0 2,899,210 - -0.5 2,899,230 + Dsui_2744 0.87 -0.6 2,899,260 + -2.6 2,899,445 + +0.1 2,899,627 - Dsui_2745 0.14 -0.6 2,900,133 + Dsui_2745 0.45 -1.1 2,900,149 + +1.1 2,900,670 - Dsui_2745 0.78 -1.1 2,900,693 + Dsui_2745 0.79 -1.5 2,900,786 + Dsui_2745 0.85 -0.5 2,900,810 + +0.5 2,900,960 - +0.5 2,901,211 + -0.2 2,901,212 + -0.4 2,901,221 + -0.5 2,901,229 - +0.5 2,901,268 + -0.6 2,901,281 - -1.5 2,901,350 + -0.2 2,901,385 + -0.6 2,901,422 + Dsui_2746 0.11 -0.5 2,901,430 - +0.8 2,901,553 + Dsui_2746 0.19 -0.4 2,901,553 + Dsui_2746 0.19 -1.1 2,901,759 - Dsui_2746 0.31 -0.9 2,901,831 + Dsui_2746 0.36 -0.3 2,901,839 - Dsui_2746 0.36 -0.5 2,901,943 - Dsui_2746 0.42 -0.1 2,902,020 - Dsui_2746 0.47 +0.4
Or see this region's nucleotide sequence