Strain Fitness in Dechlorosoma suillum PS around Dsui_2501

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2499 and Dsui_2500 are separated by 52 nucleotidesDsui_2500 and Dsui_2501 are separated by 112 nucleotidesDsui_2501 and Dsui_2502 overlap by 4 nucleotidesDsui_2502 and Dsui_2503 are separated by 2 nucleotides Dsui_2499: Dsui_2499 - MerE protein, at 2,647,150 to 2,647,386 _2499 Dsui_2500: Dsui_2500 - site-specific recombinase, DNA invertase Pin, at 2,647,439 to 2,648,053 _2500 Dsui_2501: Dsui_2501 - TniQ protein, at 2,648,166 to 2,649,332 _2501 Dsui_2502: Dsui_2502 - TniB protein, at 2,649,329 to 2,650,237 _2502 Dsui_2503: Dsui_2503 - Mu transposase/integrase, at 2,650,240 to 2,651,922 _2503 Position (kb) 2648 2649 2650Strain fitness (log2 ratio) -2 -1 0 1 2at 2647.222 kb on + strand, within Dsui_2499at 2647.227 kb on + strand, within Dsui_2499at 2647.235 kb on - strand, within Dsui_2499at 2647.299 kb on + strand, within Dsui_2499at 2647.307 kb on - strandat 2647.324 kb on - strandat 2647.474 kb on - strandat 2647.692 kb on + strand, within Dsui_2500at 2647.748 kb on + strand, within Dsui_2500at 2647.769 kb on + strand, within Dsui_2500at 2647.777 kb on - strand, within Dsui_2500at 2647.798 kb on + strandat 2647.800 kb on + strandat 2647.823 kb on - strand, within Dsui_2500at 2648.008 kb on + strandat 2648.016 kb on - strandat 2648.016 kb on - strandat 2648.016 kb on - strandat 2648.016 kb on - strandat 2648.016 kb on - strandat 2648.231 kb on + strandat 2648.239 kb on - strandat 2648.352 kb on + strand, within Dsui_2501at 2648.419 kb on + strand, within Dsui_2501at 2648.495 kb on + strand, within Dsui_2501at 2648.643 kb on - strandat 2648.643 kb on - strand, within Dsui_2501at 2648.646 kb on + strand, within Dsui_2501at 2649.070 kb on - strand, within Dsui_2501at 2649.070 kb on - strandat 2649.364 kb on + strandat 2649.566 kb on + strand, within Dsui_2502at 2649.703 kb on + strand, within Dsui_2502at 2649.711 kb on - strand, within Dsui_2502at 2649.824 kb on - strand, within Dsui_2502at 2650.079 kb on + strand, within Dsui_2502at 2650.216 kb on - strandat 2650.238 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,647,222 + Dsui_2499 0.30 -1.0
2,647,227 + Dsui_2499 0.32 -0.6
2,647,235 - Dsui_2499 0.36 -1.4
2,647,299 + Dsui_2499 0.63 -0.2
2,647,307 - -0.2
2,647,324 - +1.2
2,647,474 - -1.1
2,647,692 + Dsui_2500 0.41 -0.7
2,647,748 + Dsui_2500 0.50 +0.2
2,647,769 + Dsui_2500 0.54 +0.4
2,647,777 - Dsui_2500 0.55 -0.9
2,647,798 + +1.2
2,647,800 + +0.6
2,647,823 - Dsui_2500 0.62 -0.8
2,648,008 + -0.1
2,648,016 - +0.2
2,648,016 - -2.0
2,648,016 - -1.0
2,648,016 - -0.5
2,648,016 - -1.3
2,648,231 + -0.6
2,648,239 - +0.2
2,648,352 + Dsui_2501 0.16 -0.1
2,648,419 + Dsui_2501 0.22 -1.3
2,648,495 + Dsui_2501 0.28 -0.8
2,648,643 - -0.0
2,648,643 - Dsui_2501 0.41 +1.0
2,648,646 + Dsui_2501 0.41 -1.3
2,649,070 - Dsui_2501 0.77 -1.2
2,649,070 - +2.2
2,649,364 + -1.0
2,649,566 + Dsui_2502 0.26 +0.3
2,649,703 + Dsui_2502 0.41 +0.2
2,649,711 - Dsui_2502 0.42 +1.0
2,649,824 - Dsui_2502 0.54 -0.8
2,650,079 + Dsui_2502 0.83 -1.0
2,650,216 - -2.0
2,650,238 + -0.2

Or see this region's nucleotide sequence