Strain Fitness in Dechlorosoma suillum PS around Dsui_2313

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2312 and Dsui_2313 are separated by 144 nucleotidesDsui_2313 and Dsui_2314 overlap by 4 nucleotidesDsui_2314 and Dsui_2315 overlap by 1 nucleotides Dsui_2312: Dsui_2312 - 3-hydroxybutyrate dehydrogenase, at 2,467,804 to 2,468,586 _2312 Dsui_2313: Dsui_2313 - CTP synthase, at 2,468,731 to 2,470,371 _2313 Dsui_2314: Dsui_2314 - 3-deoxy-8-phosphooctulonate synthase, at 2,470,368 to 2,471,207 _2314 Dsui_2315: Dsui_2315 - Stress responsive A/B Barrel Domain-containing protein, at 2,471,207 to 2,471,500 _2315 Position (kb) 2468 2469 2470 2471Strain fitness (log2 ratio) -2 -1 0 1 2at 2467.787 kb on + strandat 2468.130 kb on + strand, within Dsui_2312at 2468.138 kb on + strand, within Dsui_2312at 2468.287 kb on + strand, within Dsui_2312at 2468.319 kb on - strandat 2468.336 kb on - strandat 2468.410 kb on + strand, within Dsui_2312at 2468.410 kb on + strandat 2468.410 kb on + strand, within Dsui_2312at 2468.410 kb on - strandat 2468.410 kb on - strandat 2468.425 kb on + strand, within Dsui_2312at 2468.591 kb on + strandat 2468.596 kb on + strandat 2468.609 kb on - strandat 2468.720 kb on + strandat 2470.340 kb on + strandat 2471.171 kb on + strandat 2471.171 kb on + strandat 2471.176 kb on + strandat 2471.235 kb on - strandat 2471.238 kb on + strand, within Dsui_2315at 2471.345 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,467,787 + -0.4
2,468,130 + Dsui_2312 0.42 -1.6
2,468,138 + Dsui_2312 0.43 -0.4
2,468,287 + Dsui_2312 0.62 -1.9
2,468,319 - +2.2
2,468,336 - +2.2
2,468,410 + Dsui_2312 0.77 -0.1
2,468,410 + +0.2
2,468,410 + Dsui_2312 0.77 -1.2
2,468,410 - +2.2
2,468,410 - +1.2
2,468,425 + Dsui_2312 0.79 +0.5
2,468,591 + +0.4
2,468,596 + +0.1
2,468,609 - +2.2
2,468,720 + +0.6
2,470,340 + -0.4
2,471,171 + +0.1
2,471,171 + +0.4
2,471,176 + +0.3
2,471,235 - +0.8
2,471,238 + Dsui_2315 0.11 +0.4
2,471,345 - +1.2

Or see this region's nucleotide sequence