Strain Fitness in Dechlorosoma suillum PS around Dsui_2225

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2223 and Dsui_2224 are separated by 4 nucleotidesDsui_2224 and Dsui_2225 are separated by 170 nucleotidesDsui_2225 and Dsui_2226 are separated by 229 nucleotides Dsui_2223: Dsui_2223 - putative ATP-dependent protease, at 2,363,741 to 2,366,266 _2223 Dsui_2224: Dsui_2224 - hypothetical protein, at 2,366,271 to 2,366,747 _2224 Dsui_2225: Dsui_2225 - hypothetical protein, at 2,366,918 to 2,367,067 _2225 Dsui_2226: Dsui_2226 - DNA-binding domain-containing protein, AraC-type, at 2,367,297 to 2,368,181 _2226 Position (kb) 2366 2367 2368Strain fitness (log2 ratio) -2 -1 0 1 2at 2366.029 kb on + strandat 2366.176 kb on + strandat 2366.205 kb on - strandat 2366.344 kb on + strand, within Dsui_2224at 2366.431 kb on - strand, within Dsui_2224at 2366.632 kb on + strand, within Dsui_2224at 2366.632 kb on + strand, within Dsui_2224at 2366.640 kb on - strandat 2366.691 kb on - strandat 2366.741 kb on + strandat 2366.777 kb on + strandat 2366.854 kb on - strandat 2366.894 kb on - strandat 2367.117 kb on + strandat 2367.127 kb on + strandat 2367.138 kb on + strandat 2367.343 kb on + strandat 2367.491 kb on + strand, within Dsui_2226at 2367.492 kb on + strand, within Dsui_2226at 2367.510 kb on - strandat 2367.519 kb on + strand, within Dsui_2226at 2367.524 kb on + strand, within Dsui_2226at 2367.527 kb on - strand, within Dsui_2226at 2367.527 kb on - strand, within Dsui_2226at 2367.533 kb on - strandat 2367.629 kb on + strand, within Dsui_2226at 2367.728 kb on - strandat 2367.748 kb on + strandat 2367.839 kb on - strandat 2367.840 kb on - strandat 2367.872 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,366,029 + -0.1
2,366,176 + -0.7
2,366,205 - -0.1
2,366,344 + Dsui_2224 0.15 +0.6
2,366,431 - Dsui_2224 0.34 -1.1
2,366,632 + Dsui_2224 0.76 +0.1
2,366,632 + Dsui_2224 0.76 -1.7
2,366,640 - +2.2
2,366,691 - +2.2
2,366,741 + +0.2
2,366,777 + +0.4
2,366,854 - +1.2
2,366,894 - +0.6
2,367,117 + -0.8
2,367,127 + -1.9
2,367,138 + -1.1
2,367,343 + +0.9
2,367,491 + Dsui_2226 0.22 +0.4
2,367,492 + Dsui_2226 0.22 -1.5
2,367,510 - +1.6
2,367,519 + Dsui_2226 0.25 -1.1
2,367,524 + Dsui_2226 0.26 -0.8
2,367,527 - Dsui_2226 0.26 -0.9
2,367,527 - Dsui_2226 0.26 -0.5
2,367,533 - +1.2
2,367,629 + Dsui_2226 0.38 -1.5
2,367,728 - +1.2
2,367,748 + +1.2
2,367,839 - +1.2
2,367,840 - +2.2
2,367,872 - +0.6

Or see this region's nucleotide sequence