Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2160 and Dsui_2161 are separated by 69 nucleotides Dsui_2161 and Dsui_2162 are separated by 133 nucleotides Dsui_2162 and Dsui_2163 are separated by 282 nucleotides
Dsui_2160: Dsui_2160 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,292,755 to 2,294,710
_2160
Dsui_2161: Dsui_2161 - ATP-dependent chaperone ClpB, at 2,294,780 to 2,297,365
_2161
Dsui_2162: Dsui_2162 - hypothetical protein, at 2,297,499 to 2,298,074
_2162
Dsui_2163: Dsui_2163 - putative Fe-S oxidoreductase, at 2,298,357 to 2,298,773
_2163
Position (kb)
2294
2295
2296
2297
2298 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2293.817 kb on - strand at 2293.843 kb on + strand, within Dsui_2160 at 2293.851 kb on - strand, within Dsui_2160 at 2293.857 kb on - strand, within Dsui_2160 at 2293.981 kb on + strand, within Dsui_2160 at 2294.015 kb on - strand at 2294.024 kb on + strand, within Dsui_2160 at 2294.037 kb on + strand, within Dsui_2160 at 2294.105 kb on + strand, within Dsui_2160 at 2294.165 kb on + strand, within Dsui_2160 at 2294.205 kb on + strand, within Dsui_2160 at 2294.381 kb on - strand at 2294.432 kb on + strand, within Dsui_2160 at 2294.442 kb on + strand, within Dsui_2160 at 2294.442 kb on + strand, within Dsui_2160 at 2294.450 kb on - strand at 2294.450 kb on - strand at 2294.486 kb on - strand, within Dsui_2160 at 2294.620 kb on - strand at 2294.693 kb on - strand at 2294.749 kb on - strand at 2294.805 kb on + strand at 2294.825 kb on - strand at 2294.967 kb on + strand at 2295.007 kb on - strand at 2295.091 kb on + strand, within Dsui_2161 at 2295.099 kb on - strand, within Dsui_2161 at 2295.184 kb on + strand, within Dsui_2161 at 2295.301 kb on + strand, within Dsui_2161 at 2295.309 kb on - strand, within Dsui_2161 at 2295.340 kb on - strand at 2295.384 kb on - strand at 2295.452 kb on + strand, within Dsui_2161 at 2295.499 kb on + strand, within Dsui_2161 at 2295.512 kb on - strand at 2295.529 kb on + strand, within Dsui_2161 at 2295.553 kb on + strand, within Dsui_2161 at 2295.553 kb on + strand, within Dsui_2161 at 2295.553 kb on + strand, within Dsui_2161 at 2295.553 kb on + strand, within Dsui_2161 at 2295.561 kb on - strand, within Dsui_2161 at 2295.561 kb on - strand, within Dsui_2161 at 2295.864 kb on - strand, within Dsui_2161 at 2295.929 kb on - strand, within Dsui_2161 at 2296.020 kb on + strand, within Dsui_2161 at 2296.186 kb on - strand, within Dsui_2161 at 2296.310 kb on + strand, within Dsui_2161 at 2296.323 kb on - strand, within Dsui_2161 at 2296.341 kb on - strand, within Dsui_2161 at 2296.378 kb on + strand, within Dsui_2161 at 2296.514 kb on + strand, within Dsui_2161 at 2296.630 kb on + strand, within Dsui_2161 at 2296.723 kb on + strand, within Dsui_2161 at 2296.736 kb on + strand, within Dsui_2161 at 2296.782 kb on - strand, within Dsui_2161 at 2296.811 kb on - strand at 2296.853 kb on - strand, within Dsui_2161 at 2296.853 kb on - strand, within Dsui_2161 at 2296.873 kb on - strand, within Dsui_2161 at 2296.897 kb on + strand at 2296.938 kb on + strand, within Dsui_2161 at 2296.946 kb on - strand, within Dsui_2161 at 2296.991 kb on - strand, within Dsui_2161 at 2297.018 kb on + strand, within Dsui_2161 at 2297.077 kb on - strand, within Dsui_2161 at 2297.149 kb on + strand at 2297.213 kb on - strand at 2297.354 kb on + strand at 2297.359 kb on + strand at 2297.411 kb on - strand at 2297.417 kb on - strand at 2297.440 kb on + strand at 2297.538 kb on - strand at 2297.553 kb on + strand at 2297.617 kb on + strand, within Dsui_2162 at 2297.622 kb on + strand, within Dsui_2162 at 2297.622 kb on + strand, within Dsui_2162 at 2297.628 kb on + strand, within Dsui_2162 at 2297.641 kb on - strand, within Dsui_2162 at 2297.712 kb on + strand, within Dsui_2162 at 2297.712 kb on + strand, within Dsui_2162 at 2297.777 kb on - strand, within Dsui_2162 at 2297.777 kb on - strand, within Dsui_2162 at 2297.839 kb on - strand, within Dsui_2162 at 2297.902 kb on + strand, within Dsui_2162 at 2297.902 kb on + strand, within Dsui_2162 at 2297.910 kb on - strand, within Dsui_2162 at 2297.910 kb on - strand, within Dsui_2162 at 2297.975 kb on - strand at 2298.093 kb on + strand at 2298.144 kb on + strand at 2298.144 kb on + strand at 2298.147 kb on - strand at 2298.147 kb on - strand at 2298.151 kb on + strand at 2298.206 kb on + strand at 2298.342 kb on + strand at 2298.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,293,817 - +0.9 2,293,843 + Dsui_2160 0.56 -0.3 2,293,851 - Dsui_2160 0.56 +1.4 2,293,857 - Dsui_2160 0.56 +0.4 2,293,981 + Dsui_2160 0.63 +0.2 2,294,015 - +1.8 2,294,024 + Dsui_2160 0.65 +0.4 2,294,037 + Dsui_2160 0.66 -0.6 2,294,105 + Dsui_2160 0.69 +0.3 2,294,165 + Dsui_2160 0.72 +1.0 2,294,205 + Dsui_2160 0.74 -0.9 2,294,381 - +0.6 2,294,432 + Dsui_2160 0.86 +0.2 2,294,442 + Dsui_2160 0.86 +0.7 2,294,442 + Dsui_2160 0.86 +1.1 2,294,450 - +1.8 2,294,450 - +2.2 2,294,486 - Dsui_2160 0.88 -1.3 2,294,620 - +1.0 2,294,693 - +0.2 2,294,749 - -0.7 2,294,805 + +0.4 2,294,825 - +0.9 2,294,967 + +0.2 2,295,007 - +0.4 2,295,091 + Dsui_2161 0.12 +0.5 2,295,099 - Dsui_2161 0.12 +1.8 2,295,184 + Dsui_2161 0.16 -0.3 2,295,301 + Dsui_2161 0.20 +0.0 2,295,309 - Dsui_2161 0.20 +0.9 2,295,340 - +0.2 2,295,384 - +1.2 2,295,452 + Dsui_2161 0.26 +0.3 2,295,499 + Dsui_2161 0.28 -0.2 2,295,512 - +0.6 2,295,529 + Dsui_2161 0.29 +0.1 2,295,553 + Dsui_2161 0.30 +0.0 2,295,553 + Dsui_2161 0.30 -0.2 2,295,553 + Dsui_2161 0.30 +0.3 2,295,553 + Dsui_2161 0.30 +0.3 2,295,561 - Dsui_2161 0.30 -1.5 2,295,561 - Dsui_2161 0.30 -1.1 2,295,864 - Dsui_2161 0.42 +1.2 2,295,929 - Dsui_2161 0.44 -1.3 2,296,020 + Dsui_2161 0.48 -0.1 2,296,186 - Dsui_2161 0.54 +0.9 2,296,310 + Dsui_2161 0.59 -0.1 2,296,323 - Dsui_2161 0.60 +0.0 2,296,341 - Dsui_2161 0.60 +0.4 2,296,378 + Dsui_2161 0.62 +0.4 2,296,514 + Dsui_2161 0.67 -0.5 2,296,630 + Dsui_2161 0.72 -0.1 2,296,723 + Dsui_2161 0.75 -0.3 2,296,736 + Dsui_2161 0.76 -0.1 2,296,782 - Dsui_2161 0.77 -0.4 2,296,811 - +3.2 2,296,853 - Dsui_2161 0.80 +1.0 2,296,853 - Dsui_2161 0.80 +0.8 2,296,873 - Dsui_2161 0.81 +1.6 2,296,897 + +1.2 2,296,938 + Dsui_2161 0.83 -0.9 2,296,946 - Dsui_2161 0.84 +0.4 2,296,991 - Dsui_2161 0.85 +0.2 2,297,018 + Dsui_2161 0.87 +0.0 2,297,077 - Dsui_2161 0.89 -1.3 2,297,149 + +1.2 2,297,213 - -1.2 2,297,354 + +0.4 2,297,359 + +0.7 2,297,411 - -0.8 2,297,417 - +0.6 2,297,440 + +0.1 2,297,538 - +0.1 2,297,553 + +3.8 2,297,617 + Dsui_2162 0.20 -0.4 2,297,622 + Dsui_2162 0.21 -1.0 2,297,622 + Dsui_2162 0.21 +0.5 2,297,628 + Dsui_2162 0.22 +0.3 2,297,641 - Dsui_2162 0.25 +0.7 2,297,712 + Dsui_2162 0.37 +0.9 2,297,712 + Dsui_2162 0.37 +1.4 2,297,777 - Dsui_2162 0.48 -1.3 2,297,777 - Dsui_2162 0.48 -2.5 2,297,839 - Dsui_2162 0.59 -0.5 2,297,902 + Dsui_2162 0.70 -1.5 2,297,902 + Dsui_2162 0.70 -0.8 2,297,910 - Dsui_2162 0.71 -1.3 2,297,910 - Dsui_2162 0.71 +1.2 2,297,975 - +1.2 2,298,093 + -0.8 2,298,144 + -0.4 2,298,144 + +0.6 2,298,147 - -1.3 2,298,147 - -1.1 2,298,151 + +2.2 2,298,206 + +0.6 2,298,342 + -0.6 2,298,360 + -0.9
Or see this region's nucleotide sequence