Strain Fitness in Dechlorosoma suillum PS around Dsui_2161

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2160 and Dsui_2161 are separated by 69 nucleotidesDsui_2161 and Dsui_2162 are separated by 133 nucleotidesDsui_2162 and Dsui_2163 are separated by 282 nucleotides Dsui_2160: Dsui_2160 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,292,755 to 2,294,710 _2160 Dsui_2161: Dsui_2161 - ATP-dependent chaperone ClpB, at 2,294,780 to 2,297,365 _2161 Dsui_2162: Dsui_2162 - hypothetical protein, at 2,297,499 to 2,298,074 _2162 Dsui_2163: Dsui_2163 - putative Fe-S oxidoreductase, at 2,298,357 to 2,298,773 _2163 Position (kb) 2294 2295 2296 2297 2298Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2293.817 kb on - strandat 2293.843 kb on + strand, within Dsui_2160at 2293.851 kb on - strand, within Dsui_2160at 2293.857 kb on - strand, within Dsui_2160at 2293.981 kb on + strand, within Dsui_2160at 2294.015 kb on - strandat 2294.024 kb on + strand, within Dsui_2160at 2294.037 kb on + strand, within Dsui_2160at 2294.105 kb on + strand, within Dsui_2160at 2294.165 kb on + strand, within Dsui_2160at 2294.205 kb on + strand, within Dsui_2160at 2294.381 kb on - strandat 2294.432 kb on + strand, within Dsui_2160at 2294.442 kb on + strand, within Dsui_2160at 2294.442 kb on + strand, within Dsui_2160at 2294.450 kb on - strandat 2294.450 kb on - strandat 2294.486 kb on - strand, within Dsui_2160at 2294.620 kb on - strandat 2294.693 kb on - strandat 2294.749 kb on - strandat 2294.805 kb on + strandat 2294.825 kb on - strandat 2294.967 kb on + strandat 2295.007 kb on - strandat 2295.091 kb on + strand, within Dsui_2161at 2295.099 kb on - strand, within Dsui_2161at 2295.184 kb on + strand, within Dsui_2161at 2295.301 kb on + strand, within Dsui_2161at 2295.309 kb on - strand, within Dsui_2161at 2295.340 kb on - strandat 2295.384 kb on - strandat 2295.452 kb on + strand, within Dsui_2161at 2295.499 kb on + strand, within Dsui_2161at 2295.512 kb on - strandat 2295.529 kb on + strand, within Dsui_2161at 2295.553 kb on + strand, within Dsui_2161at 2295.553 kb on + strand, within Dsui_2161at 2295.553 kb on + strand, within Dsui_2161at 2295.553 kb on + strand, within Dsui_2161at 2295.561 kb on - strand, within Dsui_2161at 2295.561 kb on - strand, within Dsui_2161at 2295.864 kb on - strand, within Dsui_2161at 2295.929 kb on - strand, within Dsui_2161at 2296.020 kb on + strand, within Dsui_2161at 2296.186 kb on - strand, within Dsui_2161at 2296.310 kb on + strand, within Dsui_2161at 2296.323 kb on - strand, within Dsui_2161at 2296.341 kb on - strand, within Dsui_2161at 2296.378 kb on + strand, within Dsui_2161at 2296.514 kb on + strand, within Dsui_2161at 2296.630 kb on + strand, within Dsui_2161at 2296.723 kb on + strand, within Dsui_2161at 2296.736 kb on + strand, within Dsui_2161at 2296.782 kb on - strand, within Dsui_2161at 2296.811 kb on - strandat 2296.853 kb on - strand, within Dsui_2161at 2296.853 kb on - strand, within Dsui_2161at 2296.873 kb on - strand, within Dsui_2161at 2296.897 kb on + strandat 2296.938 kb on + strand, within Dsui_2161at 2296.946 kb on - strand, within Dsui_2161at 2296.991 kb on - strand, within Dsui_2161at 2297.018 kb on + strand, within Dsui_2161at 2297.077 kb on - strand, within Dsui_2161at 2297.149 kb on + strandat 2297.213 kb on - strandat 2297.354 kb on + strandat 2297.359 kb on + strandat 2297.411 kb on - strandat 2297.417 kb on - strandat 2297.440 kb on + strandat 2297.538 kb on - strandat 2297.553 kb on + strandat 2297.617 kb on + strand, within Dsui_2162at 2297.622 kb on + strand, within Dsui_2162at 2297.622 kb on + strand, within Dsui_2162at 2297.628 kb on + strand, within Dsui_2162at 2297.641 kb on - strand, within Dsui_2162at 2297.712 kb on + strand, within Dsui_2162at 2297.712 kb on + strand, within Dsui_2162at 2297.777 kb on - strand, within Dsui_2162at 2297.777 kb on - strand, within Dsui_2162at 2297.839 kb on - strand, within Dsui_2162at 2297.902 kb on + strand, within Dsui_2162at 2297.902 kb on + strand, within Dsui_2162at 2297.910 kb on - strand, within Dsui_2162at 2297.910 kb on - strand, within Dsui_2162at 2297.975 kb on - strandat 2298.093 kb on + strandat 2298.144 kb on + strandat 2298.144 kb on + strandat 2298.147 kb on - strandat 2298.147 kb on - strandat 2298.151 kb on + strandat 2298.206 kb on + strandat 2298.342 kb on + strandat 2298.360 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,293,817 - +0.9
2,293,843 + Dsui_2160 0.56 -0.3
2,293,851 - Dsui_2160 0.56 +1.4
2,293,857 - Dsui_2160 0.56 +0.4
2,293,981 + Dsui_2160 0.63 +0.2
2,294,015 - +1.8
2,294,024 + Dsui_2160 0.65 +0.4
2,294,037 + Dsui_2160 0.66 -0.6
2,294,105 + Dsui_2160 0.69 +0.3
2,294,165 + Dsui_2160 0.72 +1.0
2,294,205 + Dsui_2160 0.74 -0.9
2,294,381 - +0.6
2,294,432 + Dsui_2160 0.86 +0.2
2,294,442 + Dsui_2160 0.86 +0.7
2,294,442 + Dsui_2160 0.86 +1.1
2,294,450 - +1.8
2,294,450 - +2.2
2,294,486 - Dsui_2160 0.88 -1.3
2,294,620 - +1.0
2,294,693 - +0.2
2,294,749 - -0.7
2,294,805 + +0.4
2,294,825 - +0.9
2,294,967 + +0.2
2,295,007 - +0.4
2,295,091 + Dsui_2161 0.12 +0.5
2,295,099 - Dsui_2161 0.12 +1.8
2,295,184 + Dsui_2161 0.16 -0.3
2,295,301 + Dsui_2161 0.20 +0.0
2,295,309 - Dsui_2161 0.20 +0.9
2,295,340 - +0.2
2,295,384 - +1.2
2,295,452 + Dsui_2161 0.26 +0.3
2,295,499 + Dsui_2161 0.28 -0.2
2,295,512 - +0.6
2,295,529 + Dsui_2161 0.29 +0.1
2,295,553 + Dsui_2161 0.30 +0.0
2,295,553 + Dsui_2161 0.30 -0.2
2,295,553 + Dsui_2161 0.30 +0.3
2,295,553 + Dsui_2161 0.30 +0.3
2,295,561 - Dsui_2161 0.30 -1.5
2,295,561 - Dsui_2161 0.30 -1.1
2,295,864 - Dsui_2161 0.42 +1.2
2,295,929 - Dsui_2161 0.44 -1.3
2,296,020 + Dsui_2161 0.48 -0.1
2,296,186 - Dsui_2161 0.54 +0.9
2,296,310 + Dsui_2161 0.59 -0.1
2,296,323 - Dsui_2161 0.60 +0.0
2,296,341 - Dsui_2161 0.60 +0.4
2,296,378 + Dsui_2161 0.62 +0.4
2,296,514 + Dsui_2161 0.67 -0.5
2,296,630 + Dsui_2161 0.72 -0.1
2,296,723 + Dsui_2161 0.75 -0.3
2,296,736 + Dsui_2161 0.76 -0.1
2,296,782 - Dsui_2161 0.77 -0.4
2,296,811 - +3.2
2,296,853 - Dsui_2161 0.80 +1.0
2,296,853 - Dsui_2161 0.80 +0.8
2,296,873 - Dsui_2161 0.81 +1.6
2,296,897 + +1.2
2,296,938 + Dsui_2161 0.83 -0.9
2,296,946 - Dsui_2161 0.84 +0.4
2,296,991 - Dsui_2161 0.85 +0.2
2,297,018 + Dsui_2161 0.87 +0.0
2,297,077 - Dsui_2161 0.89 -1.3
2,297,149 + +1.2
2,297,213 - -1.2
2,297,354 + +0.4
2,297,359 + +0.7
2,297,411 - -0.8
2,297,417 - +0.6
2,297,440 + +0.1
2,297,538 - +0.1
2,297,553 + +3.8
2,297,617 + Dsui_2162 0.20 -0.4
2,297,622 + Dsui_2162 0.21 -1.0
2,297,622 + Dsui_2162 0.21 +0.5
2,297,628 + Dsui_2162 0.22 +0.3
2,297,641 - Dsui_2162 0.25 +0.7
2,297,712 + Dsui_2162 0.37 +0.9
2,297,712 + Dsui_2162 0.37 +1.4
2,297,777 - Dsui_2162 0.48 -1.3
2,297,777 - Dsui_2162 0.48 -2.5
2,297,839 - Dsui_2162 0.59 -0.5
2,297,902 + Dsui_2162 0.70 -1.5
2,297,902 + Dsui_2162 0.70 -0.8
2,297,910 - Dsui_2162 0.71 -1.3
2,297,910 - Dsui_2162 0.71 +1.2
2,297,975 - +1.2
2,298,093 + -0.8
2,298,144 + -0.4
2,298,144 + +0.6
2,298,147 - -1.3
2,298,147 - -1.1
2,298,151 + +2.2
2,298,206 + +0.6
2,298,342 + -0.6
2,298,360 + -0.9

Or see this region's nucleotide sequence