Strain Fitness in Dechlorosoma suillum PS around Dsui_2160

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2159 and Dsui_2160 overlap by 4 nucleotidesDsui_2160 and Dsui_2161 are separated by 69 nucleotides Dsui_2159: Dsui_2159 - methyl-accepting chemotaxis protein, at 2,291,490 to 2,292,758 _2159 Dsui_2160: Dsui_2160 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,292,755 to 2,294,710 _2160 Dsui_2161: Dsui_2161 - ATP-dependent chaperone ClpB, at 2,294,780 to 2,297,365 _2161 Position (kb) 2292 2293 2294 2295Strain fitness (log2 ratio) -2 -1 0 1 2at 2291.760 kb on - strand, within Dsui_2159at 2291.804 kb on - strandat 2291.819 kb on + strand, within Dsui_2159at 2291.909 kb on + strand, within Dsui_2159at 2291.914 kb on + strand, within Dsui_2159at 2291.914 kb on + strand, within Dsui_2159at 2291.956 kb on - strandat 2292.024 kb on + strandat 2292.024 kb on + strand, within Dsui_2159at 2292.024 kb on + strand, within Dsui_2159at 2292.037 kb on - strandat 2292.039 kb on + strand, within Dsui_2159at 2292.292 kb on - strandat 2292.446 kb on + strand, within Dsui_2159at 2292.532 kb on + strand, within Dsui_2159at 2292.553 kb on + strand, within Dsui_2159at 2292.949 kb on + strandat 2293.025 kb on - strandat 2293.045 kb on - strandat 2293.074 kb on + strand, within Dsui_2160at 2293.157 kb on - strandat 2293.157 kb on - strandat 2293.173 kb on - strandat 2293.219 kb on + strand, within Dsui_2160at 2293.287 kb on + strand, within Dsui_2160at 2293.338 kb on - strand, within Dsui_2160at 2293.409 kb on + strand, within Dsui_2160at 2293.436 kb on - strand, within Dsui_2160at 2293.446 kb on - strand, within Dsui_2160at 2293.521 kb on + strand, within Dsui_2160at 2293.529 kb on - strandat 2293.556 kb on + strand, within Dsui_2160at 2293.674 kb on + strand, within Dsui_2160at 2293.754 kb on + strand, within Dsui_2160at 2293.817 kb on - strandat 2293.843 kb on + strand, within Dsui_2160at 2293.851 kb on - strand, within Dsui_2160at 2293.857 kb on - strand, within Dsui_2160at 2293.981 kb on + strand, within Dsui_2160at 2294.015 kb on - strandat 2294.024 kb on + strand, within Dsui_2160at 2294.037 kb on + strand, within Dsui_2160at 2294.105 kb on + strand, within Dsui_2160at 2294.165 kb on + strand, within Dsui_2160at 2294.205 kb on + strand, within Dsui_2160at 2294.381 kb on - strandat 2294.432 kb on + strand, within Dsui_2160at 2294.442 kb on + strand, within Dsui_2160at 2294.442 kb on + strand, within Dsui_2160at 2294.450 kb on - strandat 2294.450 kb on - strandat 2294.486 kb on - strand, within Dsui_2160at 2294.620 kb on - strandat 2294.693 kb on - strandat 2294.749 kb on - strandat 2294.805 kb on + strandat 2294.825 kb on - strandat 2294.967 kb on + strandat 2295.007 kb on - strandat 2295.091 kb on + strand, within Dsui_2161at 2295.099 kb on - strand, within Dsui_2161at 2295.184 kb on + strand, within Dsui_2161at 2295.301 kb on + strand, within Dsui_2161at 2295.309 kb on - strand, within Dsui_2161at 2295.340 kb on - strandat 2295.384 kb on - strandat 2295.452 kb on + strand, within Dsui_2161at 2295.499 kb on + strand, within Dsui_2161at 2295.512 kb on - strandat 2295.529 kb on + strand, within Dsui_2161at 2295.553 kb on + strand, within Dsui_2161at 2295.553 kb on + strand, within Dsui_2161at 2295.553 kb on + strand, within Dsui_2161at 2295.553 kb on + strand, within Dsui_2161at 2295.561 kb on - strand, within Dsui_2161at 2295.561 kb on - strand, within Dsui_2161

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,291,760 - Dsui_2159 0.21 -1.4
2,291,804 - -0.6
2,291,819 + Dsui_2159 0.26 +0.3
2,291,909 + Dsui_2159 0.33 -1.9
2,291,914 + Dsui_2159 0.33 -0.5
2,291,914 + Dsui_2159 0.33 +0.3
2,291,956 - +2.2
2,292,024 + +0.6
2,292,024 + Dsui_2159 0.42 -0.8
2,292,024 + Dsui_2159 0.42 -2.3
2,292,037 - +0.9
2,292,039 + Dsui_2159 0.43 -0.8
2,292,292 - +2.2
2,292,446 + Dsui_2159 0.75 +0.8
2,292,532 + Dsui_2159 0.82 +0.3
2,292,553 + Dsui_2159 0.84 +0.6
2,292,949 + -0.0
2,293,025 - +1.2
2,293,045 - +1.2
2,293,074 + Dsui_2160 0.16 +0.6
2,293,157 - +2.2
2,293,157 - +2.2
2,293,173 - +1.2
2,293,219 + Dsui_2160 0.24 -0.1
2,293,287 + Dsui_2160 0.27 +0.9
2,293,338 - Dsui_2160 0.30 +0.2
2,293,409 + Dsui_2160 0.33 +0.2
2,293,436 - Dsui_2160 0.35 +0.3
2,293,446 - Dsui_2160 0.35 -1.6
2,293,521 + Dsui_2160 0.39 +0.9
2,293,529 - +0.2
2,293,556 + Dsui_2160 0.41 +0.2
2,293,674 + Dsui_2160 0.47 -0.5
2,293,754 + Dsui_2160 0.51 +0.2
2,293,817 - +0.9
2,293,843 + Dsui_2160 0.56 -0.3
2,293,851 - Dsui_2160 0.56 +1.4
2,293,857 - Dsui_2160 0.56 +0.4
2,293,981 + Dsui_2160 0.63 +0.2
2,294,015 - +1.8
2,294,024 + Dsui_2160 0.65 +0.4
2,294,037 + Dsui_2160 0.66 -0.6
2,294,105 + Dsui_2160 0.69 +0.3
2,294,165 + Dsui_2160 0.72 +1.0
2,294,205 + Dsui_2160 0.74 -0.9
2,294,381 - +0.6
2,294,432 + Dsui_2160 0.86 +0.2
2,294,442 + Dsui_2160 0.86 +0.7
2,294,442 + Dsui_2160 0.86 +1.1
2,294,450 - +1.8
2,294,450 - +2.2
2,294,486 - Dsui_2160 0.88 -1.3
2,294,620 - +1.0
2,294,693 - +0.2
2,294,749 - -0.7
2,294,805 + +0.4
2,294,825 - +0.9
2,294,967 + +0.2
2,295,007 - +0.4
2,295,091 + Dsui_2161 0.12 +0.5
2,295,099 - Dsui_2161 0.12 +1.8
2,295,184 + Dsui_2161 0.16 -0.3
2,295,301 + Dsui_2161 0.20 +0.0
2,295,309 - Dsui_2161 0.20 +0.9
2,295,340 - +0.2
2,295,384 - +1.2
2,295,452 + Dsui_2161 0.26 +0.3
2,295,499 + Dsui_2161 0.28 -0.2
2,295,512 - +0.6
2,295,529 + Dsui_2161 0.29 +0.1
2,295,553 + Dsui_2161 0.30 +0.0
2,295,553 + Dsui_2161 0.30 -0.2
2,295,553 + Dsui_2161 0.30 +0.3
2,295,553 + Dsui_2161 0.30 +0.3
2,295,561 - Dsui_2161 0.30 -1.5
2,295,561 - Dsui_2161 0.30 -1.1

Or see this region's nucleotide sequence