Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2159 and Dsui_2160 overlap by 4 nucleotides Dsui_2160 and Dsui_2161 are separated by 69 nucleotides
Dsui_2159: Dsui_2159 - methyl-accepting chemotaxis protein, at 2,291,490 to 2,292,758
_2159
Dsui_2160: Dsui_2160 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,292,755 to 2,294,710
_2160
Dsui_2161: Dsui_2161 - ATP-dependent chaperone ClpB, at 2,294,780 to 2,297,365
_2161
Position (kb)
2292
2293
2294
2295 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2291.760 kb on - strand, within Dsui_2159 at 2291.804 kb on - strand at 2291.819 kb on + strand, within Dsui_2159 at 2291.909 kb on + strand, within Dsui_2159 at 2291.914 kb on + strand, within Dsui_2159 at 2291.914 kb on + strand, within Dsui_2159 at 2291.956 kb on - strand at 2292.024 kb on + strand at 2292.024 kb on + strand, within Dsui_2159 at 2292.024 kb on + strand, within Dsui_2159 at 2292.037 kb on - strand at 2292.039 kb on + strand, within Dsui_2159 at 2292.292 kb on - strand at 2292.446 kb on + strand, within Dsui_2159 at 2292.532 kb on + strand, within Dsui_2159 at 2292.553 kb on + strand, within Dsui_2159 at 2292.949 kb on + strand at 2293.025 kb on - strand at 2293.045 kb on - strand at 2293.074 kb on + strand, within Dsui_2160 at 2293.157 kb on - strand at 2293.157 kb on - strand at 2293.173 kb on - strand at 2293.219 kb on + strand, within Dsui_2160 at 2293.287 kb on + strand, within Dsui_2160 at 2293.338 kb on - strand, within Dsui_2160 at 2293.409 kb on + strand, within Dsui_2160 at 2293.436 kb on - strand, within Dsui_2160 at 2293.446 kb on - strand, within Dsui_2160 at 2293.521 kb on + strand, within Dsui_2160 at 2293.529 kb on - strand at 2293.556 kb on + strand, within Dsui_2160 at 2293.674 kb on + strand, within Dsui_2160 at 2293.754 kb on + strand, within Dsui_2160 at 2293.817 kb on - strand at 2293.843 kb on + strand, within Dsui_2160 at 2293.851 kb on - strand, within Dsui_2160 at 2293.857 kb on - strand, within Dsui_2160 at 2293.981 kb on + strand, within Dsui_2160 at 2294.015 kb on - strand at 2294.024 kb on + strand, within Dsui_2160 at 2294.037 kb on + strand, within Dsui_2160 at 2294.105 kb on + strand, within Dsui_2160 at 2294.165 kb on + strand, within Dsui_2160 at 2294.205 kb on + strand, within Dsui_2160 at 2294.381 kb on - strand at 2294.432 kb on + strand, within Dsui_2160 at 2294.442 kb on + strand, within Dsui_2160 at 2294.442 kb on + strand, within Dsui_2160 at 2294.450 kb on - strand at 2294.450 kb on - strand at 2294.486 kb on - strand, within Dsui_2160 at 2294.620 kb on - strand at 2294.693 kb on - strand at 2294.749 kb on - strand at 2294.805 kb on + strand at 2294.825 kb on - strand at 2294.967 kb on + strand at 2295.007 kb on - strand at 2295.091 kb on + strand, within Dsui_2161 at 2295.099 kb on - strand, within Dsui_2161 at 2295.184 kb on + strand, within Dsui_2161 at 2295.301 kb on + strand, within Dsui_2161 at 2295.309 kb on - strand, within Dsui_2161 at 2295.340 kb on - strand at 2295.384 kb on - strand at 2295.452 kb on + strand, within Dsui_2161 at 2295.499 kb on + strand, within Dsui_2161 at 2295.512 kb on - strand at 2295.529 kb on + strand, within Dsui_2161 at 2295.553 kb on + strand, within Dsui_2161 at 2295.553 kb on + strand, within Dsui_2161 at 2295.553 kb on + strand, within Dsui_2161 at 2295.553 kb on + strand, within Dsui_2161 at 2295.561 kb on - strand, within Dsui_2161 at 2295.561 kb on - strand, within Dsui_2161
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,291,760 - Dsui_2159 0.21 -1.4 2,291,804 - -0.6 2,291,819 + Dsui_2159 0.26 +0.3 2,291,909 + Dsui_2159 0.33 -1.9 2,291,914 + Dsui_2159 0.33 -0.5 2,291,914 + Dsui_2159 0.33 +0.3 2,291,956 - +2.2 2,292,024 + +0.6 2,292,024 + Dsui_2159 0.42 -0.8 2,292,024 + Dsui_2159 0.42 -2.3 2,292,037 - +0.9 2,292,039 + Dsui_2159 0.43 -0.8 2,292,292 - +2.2 2,292,446 + Dsui_2159 0.75 +0.8 2,292,532 + Dsui_2159 0.82 +0.3 2,292,553 + Dsui_2159 0.84 +0.6 2,292,949 + -0.0 2,293,025 - +1.2 2,293,045 - +1.2 2,293,074 + Dsui_2160 0.16 +0.6 2,293,157 - +2.2 2,293,157 - +2.2 2,293,173 - +1.2 2,293,219 + Dsui_2160 0.24 -0.1 2,293,287 + Dsui_2160 0.27 +0.9 2,293,338 - Dsui_2160 0.30 +0.2 2,293,409 + Dsui_2160 0.33 +0.2 2,293,436 - Dsui_2160 0.35 +0.3 2,293,446 - Dsui_2160 0.35 -1.6 2,293,521 + Dsui_2160 0.39 +0.9 2,293,529 - +0.2 2,293,556 + Dsui_2160 0.41 +0.2 2,293,674 + Dsui_2160 0.47 -0.5 2,293,754 + Dsui_2160 0.51 +0.2 2,293,817 - +0.9 2,293,843 + Dsui_2160 0.56 -0.3 2,293,851 - Dsui_2160 0.56 +1.4 2,293,857 - Dsui_2160 0.56 +0.4 2,293,981 + Dsui_2160 0.63 +0.2 2,294,015 - +1.8 2,294,024 + Dsui_2160 0.65 +0.4 2,294,037 + Dsui_2160 0.66 -0.6 2,294,105 + Dsui_2160 0.69 +0.3 2,294,165 + Dsui_2160 0.72 +1.0 2,294,205 + Dsui_2160 0.74 -0.9 2,294,381 - +0.6 2,294,432 + Dsui_2160 0.86 +0.2 2,294,442 + Dsui_2160 0.86 +0.7 2,294,442 + Dsui_2160 0.86 +1.1 2,294,450 - +1.8 2,294,450 - +2.2 2,294,486 - Dsui_2160 0.88 -1.3 2,294,620 - +1.0 2,294,693 - +0.2 2,294,749 - -0.7 2,294,805 + +0.4 2,294,825 - +0.9 2,294,967 + +0.2 2,295,007 - +0.4 2,295,091 + Dsui_2161 0.12 +0.5 2,295,099 - Dsui_2161 0.12 +1.8 2,295,184 + Dsui_2161 0.16 -0.3 2,295,301 + Dsui_2161 0.20 +0.0 2,295,309 - Dsui_2161 0.20 +0.9 2,295,340 - +0.2 2,295,384 - +1.2 2,295,452 + Dsui_2161 0.26 +0.3 2,295,499 + Dsui_2161 0.28 -0.2 2,295,512 - +0.6 2,295,529 + Dsui_2161 0.29 +0.1 2,295,553 + Dsui_2161 0.30 +0.0 2,295,553 + Dsui_2161 0.30 -0.2 2,295,553 + Dsui_2161 0.30 +0.3 2,295,553 + Dsui_2161 0.30 +0.3 2,295,561 - Dsui_2161 0.30 -1.5 2,295,561 - Dsui_2161 0.30 -1.1
Or see this region's nucleotide sequence