Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2157 and Dsui_2158 overlap by 20 nucleotides Dsui_2158 and Dsui_2159 are separated by 237 nucleotides Dsui_2159 and Dsui_2160 overlap by 4 nucleotides
Dsui_2157: Dsui_2157 - PAS domain S-box, at 2,288,246 to 2,290,624
_2157
Dsui_2158: Dsui_2158 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,290,605 to 2,291,252
_2158
Dsui_2159: Dsui_2159 - methyl-accepting chemotaxis protein, at 2,291,490 to 2,292,758
_2159
Dsui_2160: Dsui_2160 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,292,755 to 2,294,710
_2160
Position (kb)
2291
2292
2293 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2290.582 kb on + strand at 2290.587 kb on + strand at 2290.587 kb on + strand at 2290.653 kb on + strand at 2290.697 kb on + strand, within Dsui_2158 at 2290.761 kb on + strand, within Dsui_2158 at 2290.770 kb on - strand at 2291.110 kb on + strand at 2291.332 kb on - strand at 2291.434 kb on + strand at 2291.613 kb on + strand at 2291.656 kb on + strand, within Dsui_2159 at 2291.670 kb on - strand, within Dsui_2159 at 2291.673 kb on + strand, within Dsui_2159 at 2291.673 kb on + strand, within Dsui_2159 at 2291.709 kb on + strand, within Dsui_2159 at 2291.760 kb on - strand, within Dsui_2159 at 2291.804 kb on - strand at 2291.819 kb on + strand, within Dsui_2159 at 2291.909 kb on + strand, within Dsui_2159 at 2291.914 kb on + strand, within Dsui_2159 at 2291.914 kb on + strand, within Dsui_2159 at 2291.956 kb on - strand at 2292.024 kb on + strand at 2292.024 kb on + strand, within Dsui_2159 at 2292.024 kb on + strand, within Dsui_2159 at 2292.037 kb on - strand at 2292.039 kb on + strand, within Dsui_2159 at 2292.292 kb on - strand at 2292.446 kb on + strand, within Dsui_2159 at 2292.532 kb on + strand, within Dsui_2159 at 2292.553 kb on + strand, within Dsui_2159 at 2292.949 kb on + strand at 2293.025 kb on - strand at 2293.045 kb on - strand at 2293.074 kb on + strand, within Dsui_2160 at 2293.157 kb on - strand at 2293.157 kb on - strand at 2293.173 kb on - strand at 2293.219 kb on + strand, within Dsui_2160 at 2293.287 kb on + strand, within Dsui_2160 at 2293.338 kb on - strand, within Dsui_2160 at 2293.409 kb on + strand, within Dsui_2160 at 2293.436 kb on - strand, within Dsui_2160 at 2293.446 kb on - strand, within Dsui_2160 at 2293.521 kb on + strand, within Dsui_2160 at 2293.529 kb on - strand at 2293.556 kb on + strand, within Dsui_2160 at 2293.674 kb on + strand, within Dsui_2160 at 2293.754 kb on + strand, within Dsui_2160
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,290,582 + -0.0 2,290,587 + +0.2 2,290,587 + +0.7 2,290,653 + -1.5 2,290,697 + Dsui_2158 0.14 -1.2 2,290,761 + Dsui_2158 0.24 -2.4 2,290,770 - +2.2 2,291,110 + -0.4 2,291,332 - -0.5 2,291,434 + -0.3 2,291,613 + -0.5 2,291,656 + Dsui_2159 0.13 -0.4 2,291,670 - Dsui_2159 0.14 +1.5 2,291,673 + Dsui_2159 0.14 -0.8 2,291,673 + Dsui_2159 0.14 -1.0 2,291,709 + Dsui_2159 0.17 -1.2 2,291,760 - Dsui_2159 0.21 -1.4 2,291,804 - -0.6 2,291,819 + Dsui_2159 0.26 +0.3 2,291,909 + Dsui_2159 0.33 -1.9 2,291,914 + Dsui_2159 0.33 -0.5 2,291,914 + Dsui_2159 0.33 +0.3 2,291,956 - +2.2 2,292,024 + +0.6 2,292,024 + Dsui_2159 0.42 -0.8 2,292,024 + Dsui_2159 0.42 -2.3 2,292,037 - +0.9 2,292,039 + Dsui_2159 0.43 -0.8 2,292,292 - +2.2 2,292,446 + Dsui_2159 0.75 +0.8 2,292,532 + Dsui_2159 0.82 +0.3 2,292,553 + Dsui_2159 0.84 +0.6 2,292,949 + -0.0 2,293,025 - +1.2 2,293,045 - +1.2 2,293,074 + Dsui_2160 0.16 +0.6 2,293,157 - +2.2 2,293,157 - +2.2 2,293,173 - +1.2 2,293,219 + Dsui_2160 0.24 -0.1 2,293,287 + Dsui_2160 0.27 +0.9 2,293,338 - Dsui_2160 0.30 +0.2 2,293,409 + Dsui_2160 0.33 +0.2 2,293,436 - Dsui_2160 0.35 +0.3 2,293,446 - Dsui_2160 0.35 -1.6 2,293,521 + Dsui_2160 0.39 +0.9 2,293,529 - +0.2 2,293,556 + Dsui_2160 0.41 +0.2 2,293,674 + Dsui_2160 0.47 -0.5 2,293,754 + Dsui_2160 0.51 +0.2
Or see this region's nucleotide sequence