Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2119 and Dsui_2120 are separated by 11 nucleotides Dsui_2120 and Dsui_2121 are separated by 35 nucleotides Dsui_2121 and Dsui_2122 overlap by 4 nucleotides
Dsui_2119: Dsui_2119 - uncharacterized protein SCO1/SenC/PrrC, at 2,244,880 to 2,246,016
_2119
Dsui_2120: Dsui_2120 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,246,028 to 2,246,882
_2120
Dsui_2121: Dsui_2121 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 2,246,918 to 2,247,727
_2121
Dsui_2122: Dsui_2122 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 2,247,724 to 2,248,770
_2122
Position (kb)
2246
2247
2248 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2245.963 kb on + strand at 2245.963 kb on + strand at 2246.044 kb on - strand at 2246.104 kb on - strand at 2246.109 kb on - strand at 2246.114 kb on + strand at 2246.151 kb on + strand, within Dsui_2120 at 2246.154 kb on - strand, within Dsui_2120 at 2246.169 kb on - strand at 2246.250 kb on + strand, within Dsui_2120 at 2246.540 kb on + strand at 2246.549 kb on - strand at 2246.588 kb on + strand at 2246.629 kb on - strand, within Dsui_2120 at 2246.767 kb on + strand at 2246.822 kb on - strand at 2246.873 kb on - strand at 2246.905 kb on - strand at 2247.241 kb on + strand at 2247.266 kb on - strand, within Dsui_2121 at 2247.421 kb on - strand, within Dsui_2121 at 2247.633 kb on - strand at 2247.707 kb on + strand at 2247.715 kb on - strand at 2247.755 kb on + strand at 2247.828 kb on + strand at 2247.888 kb on + strand, within Dsui_2122 at 2247.920 kb on - strand, within Dsui_2122 at 2247.930 kb on + strand, within Dsui_2122 at 2247.930 kb on + strand, within Dsui_2122 at 2247.938 kb on - strand at 2248.018 kb on + strand at 2248.033 kb on + strand at 2248.040 kb on + strand, within Dsui_2122 at 2248.130 kb on + strand, within Dsui_2122 at 2248.138 kb on - strand, within Dsui_2122 at 2248.166 kb on - strand at 2248.201 kb on + strand, within Dsui_2122 at 2248.209 kb on - strand, within Dsui_2122 at 2248.219 kb on - strand at 2248.235 kb on + strand, within Dsui_2122 at 2248.278 kb on - strand at 2248.303 kb on - strand at 2248.412 kb on - strand, within Dsui_2122 at 2248.483 kb on - strand at 2248.508 kb on + strand, within Dsui_2122 at 2248.651 kb on - strand at 2248.670 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,245,963 + +2.8 2,245,963 + +1.2 2,246,044 - +0.2 2,246,104 - -1.0 2,246,109 - -0.6 2,246,114 + +2.8 2,246,151 + Dsui_2120 0.14 +0.9 2,246,154 - Dsui_2120 0.15 +0.3 2,246,169 - +0.6 2,246,250 + Dsui_2120 0.26 -0.0 2,246,540 + +1.2 2,246,549 - +2.2 2,246,588 + -0.1 2,246,629 - Dsui_2120 0.70 +1.2 2,246,767 + +0.2 2,246,822 - +0.6 2,246,873 - +0.6 2,246,905 - -0.4 2,247,241 + +1.2 2,247,266 - Dsui_2121 0.43 -0.6 2,247,421 - Dsui_2121 0.62 +0.7 2,247,633 - -0.4 2,247,707 + +2.2 2,247,715 - +2.2 2,247,755 + +2.2 2,247,828 + +2.2 2,247,888 + Dsui_2122 0.16 +0.3 2,247,920 - Dsui_2122 0.19 +0.4 2,247,930 + Dsui_2122 0.20 +0.8 2,247,930 + Dsui_2122 0.20 +0.6 2,247,938 - +1.2 2,248,018 + -0.1 2,248,033 + +0.6 2,248,040 + Dsui_2122 0.30 +0.2 2,248,130 + Dsui_2122 0.39 -1.4 2,248,138 - Dsui_2122 0.40 +0.2 2,248,166 - +0.2 2,248,201 + Dsui_2122 0.46 -0.1 2,248,209 - Dsui_2122 0.46 +0.5 2,248,219 - +0.6 2,248,235 + Dsui_2122 0.49 -0.4 2,248,278 - +0.6 2,248,303 - +0.6 2,248,412 - Dsui_2122 0.66 -1.3 2,248,483 - -0.6 2,248,508 + Dsui_2122 0.75 +0.2 2,248,651 - -0.4 2,248,670 - +1.2
Or see this region's nucleotide sequence