Strain Fitness in Dechlorosoma suillum PS around Dsui_2121

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2119 and Dsui_2120 are separated by 11 nucleotidesDsui_2120 and Dsui_2121 are separated by 35 nucleotidesDsui_2121 and Dsui_2122 overlap by 4 nucleotides Dsui_2119: Dsui_2119 - uncharacterized protein SCO1/SenC/PrrC, at 2,244,880 to 2,246,016 _2119 Dsui_2120: Dsui_2120 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,246,028 to 2,246,882 _2120 Dsui_2121: Dsui_2121 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 2,246,918 to 2,247,727 _2121 Dsui_2122: Dsui_2122 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 2,247,724 to 2,248,770 _2122 Position (kb) 2246 2247 2248Strain fitness (log2 ratio) -1 0 1 2 3at 2245.963 kb on + strandat 2245.963 kb on + strandat 2246.044 kb on - strandat 2246.104 kb on - strandat 2246.109 kb on - strandat 2246.114 kb on + strandat 2246.151 kb on + strand, within Dsui_2120at 2246.154 kb on - strand, within Dsui_2120at 2246.169 kb on - strandat 2246.250 kb on + strand, within Dsui_2120at 2246.540 kb on + strandat 2246.549 kb on - strandat 2246.588 kb on + strandat 2246.629 kb on - strand, within Dsui_2120at 2246.767 kb on + strandat 2246.822 kb on - strandat 2246.873 kb on - strandat 2246.905 kb on - strandat 2247.241 kb on + strandat 2247.266 kb on - strand, within Dsui_2121at 2247.421 kb on - strand, within Dsui_2121at 2247.633 kb on - strandat 2247.707 kb on + strandat 2247.715 kb on - strandat 2247.755 kb on + strandat 2247.828 kb on + strandat 2247.888 kb on + strand, within Dsui_2122at 2247.920 kb on - strand, within Dsui_2122at 2247.930 kb on + strand, within Dsui_2122at 2247.930 kb on + strand, within Dsui_2122at 2247.938 kb on - strandat 2248.018 kb on + strandat 2248.033 kb on + strandat 2248.040 kb on + strand, within Dsui_2122at 2248.130 kb on + strand, within Dsui_2122at 2248.138 kb on - strand, within Dsui_2122at 2248.166 kb on - strandat 2248.201 kb on + strand, within Dsui_2122at 2248.209 kb on - strand, within Dsui_2122at 2248.219 kb on - strandat 2248.235 kb on + strand, within Dsui_2122at 2248.278 kb on - strandat 2248.303 kb on - strandat 2248.412 kb on - strand, within Dsui_2122at 2248.483 kb on - strandat 2248.508 kb on + strand, within Dsui_2122at 2248.651 kb on - strandat 2248.670 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,245,963 + +2.8
2,245,963 + +1.2
2,246,044 - +0.2
2,246,104 - -1.0
2,246,109 - -0.6
2,246,114 + +2.8
2,246,151 + Dsui_2120 0.14 +0.9
2,246,154 - Dsui_2120 0.15 +0.3
2,246,169 - +0.6
2,246,250 + Dsui_2120 0.26 -0.0
2,246,540 + +1.2
2,246,549 - +2.2
2,246,588 + -0.1
2,246,629 - Dsui_2120 0.70 +1.2
2,246,767 + +0.2
2,246,822 - +0.6
2,246,873 - +0.6
2,246,905 - -0.4
2,247,241 + +1.2
2,247,266 - Dsui_2121 0.43 -0.6
2,247,421 - Dsui_2121 0.62 +0.7
2,247,633 - -0.4
2,247,707 + +2.2
2,247,715 - +2.2
2,247,755 + +2.2
2,247,828 + +2.2
2,247,888 + Dsui_2122 0.16 +0.3
2,247,920 - Dsui_2122 0.19 +0.4
2,247,930 + Dsui_2122 0.20 +0.8
2,247,930 + Dsui_2122 0.20 +0.6
2,247,938 - +1.2
2,248,018 + -0.1
2,248,033 + +0.6
2,248,040 + Dsui_2122 0.30 +0.2
2,248,130 + Dsui_2122 0.39 -1.4
2,248,138 - Dsui_2122 0.40 +0.2
2,248,166 - +0.2
2,248,201 + Dsui_2122 0.46 -0.1
2,248,209 - Dsui_2122 0.46 +0.5
2,248,219 - +0.6
2,248,235 + Dsui_2122 0.49 -0.4
2,248,278 - +0.6
2,248,303 - +0.6
2,248,412 - Dsui_2122 0.66 -1.3
2,248,483 - -0.6
2,248,508 + Dsui_2122 0.75 +0.2
2,248,651 - -0.4
2,248,670 - +1.2

Or see this region's nucleotide sequence