Strain Fitness in Dechlorosoma suillum PS around Dsui_2079

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2077 and Dsui_2078 are separated by 153 nucleotidesDsui_2078 and Dsui_2079 are separated by 135 nucleotidesDsui_2079 and Dsui_2080 overlap by 4 nucleotidesDsui_2080 and Dsui_2081 are separated by 6 nucleotides Dsui_2077: Dsui_2077 - cAMP-binding protein, at 2,196,831 to 2,198,312 _2077 Dsui_2078: Dsui_2078 - cytochrome c551/c552, at 2,198,466 to 2,198,774 _2078 Dsui_2079: Dsui_2079 - histidine kinase, at 2,198,910 to 2,200,745 _2079 Dsui_2080: Dsui_2080 - response regulator, at 2,200,742 to 2,201,386 _2080 Dsui_2081: Dsui_2081 - transcriptional regulator with HTH domain and aminotransferase domain, at 2,201,393 to 2,202,961 _2081 Position (kb) 2198 2199 2200 2201Strain fitness (log2 ratio) -1 0 1 2 3 4at 2197.977 kb on + strand, within Dsui_2077at 2197.996 kb on + strand, within Dsui_2077at 2198.054 kb on - strandat 2198.069 kb on - strandat 2198.095 kb on + strand, within Dsui_2077at 2198.236 kb on - strandat 2198.265 kb on + strandat 2198.316 kb on - strandat 2198.320 kb on + strandat 2198.423 kb on + strandat 2198.426 kb on - strandat 2198.490 kb on - strandat 2198.538 kb on + strand, within Dsui_2078at 2198.543 kb on + strand, within Dsui_2078at 2198.543 kb on + strandat 2198.551 kb on - strand, within Dsui_2078at 2198.567 kb on - strand, within Dsui_2078at 2198.603 kb on + strandat 2198.624 kb on + strandat 2198.624 kb on + strand, within Dsui_2078at 2198.624 kb on + strand, within Dsui_2078at 2198.776 kb on + strandat 2198.986 kb on + strandat 2199.037 kb on + strandat 2199.091 kb on - strandat 2199.172 kb on - strandat 2199.179 kb on + strandat 2199.216 kb on - strandat 2199.447 kb on - strandat 2199.651 kb on - strandat 2199.701 kb on + strand, within Dsui_2079at 2199.709 kb on - strand, within Dsui_2079at 2199.755 kb on + strand, within Dsui_2079at 2199.786 kb on + strandat 2199.922 kb on + strand, within Dsui_2079at 2199.955 kb on + strand, within Dsui_2079at 2199.955 kb on + strand, within Dsui_2079at 2199.967 kb on + strand, within Dsui_2079at 2200.072 kb on - strandat 2200.303 kb on + strandat 2200.313 kb on + strand, within Dsui_2079at 2200.495 kb on - strand, within Dsui_2079at 2200.541 kb on + strand, within Dsui_2079at 2200.546 kb on + strandat 2200.554 kb on + strand, within Dsui_2079at 2200.606 kb on + strandat 2200.608 kb on - strandat 2200.681 kb on + strandat 2200.692 kb on + strandat 2200.814 kb on - strandat 2200.827 kb on - strandat 2200.827 kb on - strand, within Dsui_2080at 2200.841 kb on + strand, within Dsui_2080at 2200.971 kb on - strand, within Dsui_2080at 2201.044 kb on + strand, within Dsui_2080at 2201.081 kb on + strand, within Dsui_2080at 2201.109 kb on - strandat 2201.228 kb on + strandat 2201.293 kb on - strand, within Dsui_2080at 2201.687 kb on - strand, within Dsui_2081at 2201.692 kb on - strand, within Dsui_2081at 2201.735 kb on - strand, within Dsui_2081

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,197,977 + Dsui_2077 0.77 +2.7
2,197,996 + Dsui_2077 0.79 +2.8
2,198,054 - +2.8
2,198,069 - +3.8
2,198,095 + Dsui_2077 0.85 +2.8
2,198,236 - +1.8
2,198,265 + +3.4
2,198,316 - +3.2
2,198,320 + -0.8
2,198,423 + -0.2
2,198,426 - +1.2
2,198,490 - +0.2
2,198,538 + Dsui_2078 0.23 +0.4
2,198,543 + Dsui_2078 0.25 +0.1
2,198,543 + +0.9
2,198,551 - Dsui_2078 0.28 +0.6
2,198,567 - Dsui_2078 0.33 +0.9
2,198,603 + +0.6
2,198,624 + +1.2
2,198,624 + Dsui_2078 0.51 -1.4
2,198,624 + Dsui_2078 0.51 -0.4
2,198,776 + +1.2
2,198,986 + +0.2
2,199,037 + +1.2
2,199,091 - +1.2
2,199,172 - +2.2
2,199,179 + +2.2
2,199,216 - +1.2
2,199,447 - +2.2
2,199,651 - -0.1
2,199,701 + Dsui_2079 0.43 +1.1
2,199,709 - Dsui_2079 0.44 +1.6
2,199,755 + Dsui_2079 0.46 -0.4
2,199,786 + +1.2
2,199,922 + Dsui_2079 0.55 +0.7
2,199,955 + Dsui_2079 0.57 -1.2
2,199,955 + Dsui_2079 0.57 +1.0
2,199,967 + Dsui_2079 0.58 -0.2
2,200,072 - +0.2
2,200,303 + +0.9
2,200,313 + Dsui_2079 0.76 -0.5
2,200,495 - Dsui_2079 0.86 +0.4
2,200,541 + Dsui_2079 0.89 -0.6
2,200,546 + -0.6
2,200,554 + Dsui_2079 0.90 +0.9
2,200,606 + +0.2
2,200,608 - +1.6
2,200,681 + -0.4
2,200,692 + -0.1
2,200,814 - +0.6
2,200,827 - +3.2
2,200,827 - Dsui_2080 0.13 -0.4
2,200,841 + Dsui_2080 0.15 +1.5
2,200,971 - Dsui_2080 0.36 -1.2
2,201,044 + Dsui_2080 0.47 +0.2
2,201,081 + Dsui_2080 0.53 -0.4
2,201,109 - -0.1
2,201,228 + +1.2
2,201,293 - Dsui_2080 0.85 -1.4
2,201,687 - Dsui_2081 0.19 -1.6
2,201,692 - Dsui_2081 0.19 -0.7
2,201,735 - Dsui_2081 0.22 +0.1

Or see this region's nucleotide sequence