Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1943 and Dsui_1944 are separated by 114 nucleotides Dsui_1944 and Dsui_1945 are separated by 84 nucleotides Dsui_1945 and Dsui_1946 overlap by 4 nucleotides
Dsui_1943: Dsui_1943 - ribosomal protein S1, at 2,055,434 to 2,057,140
_1943
Dsui_1944: Dsui_1944 - integration host factor, beta subunit, at 2,057,255 to 2,057,557
_1944
Dsui_1945: Dsui_1945 - uncharacterized integral membrane protein, at 2,057,642 to 2,057,968
_1945
Dsui_1946: Dsui_1946 - putative N-acetylglucosaminyl transferase, at 2,057,965 to 2,059,134
_1946
Position (kb)
2057
2058 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2057.182 kb on - strand at 2057.205 kb on + strand at 2057.220 kb on - strand at 2057.262 kb on + strand at 2057.355 kb on + strand, within Dsui_1944 at 2057.360 kb on + strand, within Dsui_1944 at 2057.365 kb on + strand, within Dsui_1944 at 2057.373 kb on - strand at 2057.437 kb on + strand, within Dsui_1944 at 2057.443 kb on + strand, within Dsui_1944 at 2057.486 kb on + strand, within Dsui_1944 at 2057.507 kb on + strand, within Dsui_1944 at 2057.510 kb on - strand at 2057.519 kb on + strand, within Dsui_1944 at 2057.521 kb on + strand, within Dsui_1944 at 2057.525 kb on + strand, within Dsui_1944 at 2057.534 kb on - strand at 2057.565 kb on - strand at 2057.570 kb on + strand at 2057.575 kb on + strand at 2057.600 kb on + strand at 2057.600 kb on + strand at 2057.601 kb on + strand at 2057.608 kb on - strand at 2057.609 kb on - strand at 2057.646 kb on - strand at 2057.647 kb on - strand at 2057.653 kb on + strand at 2057.723 kb on + strand, within Dsui_1945 at 2057.774 kb on - strand, within Dsui_1945 at 2057.821 kb on - strand, within Dsui_1945 at 2057.829 kb on - strand, within Dsui_1945 at 2057.842 kb on + strand, within Dsui_1945 at 2058.075 kb on + strand at 2058.133 kb on + strand, within Dsui_1946 at 2058.271 kb on - strand, within Dsui_1946 at 2058.321 kb on + strand, within Dsui_1946 at 2058.377 kb on + strand, within Dsui_1946 at 2058.433 kb on + strand, within Dsui_1946 at 2058.470 kb on - strand, within Dsui_1946 at 2058.470 kb on - strand, within Dsui_1946 at 2058.501 kb on + strand, within Dsui_1946 at 2058.501 kb on + strand, within Dsui_1946 at 2058.509 kb on - strand at 2058.638 kb on + strand, within Dsui_1946 at 2058.683 kb on + strand, within Dsui_1946 at 2058.739 kb on + strand, within Dsui_1946 at 2058.811 kb on + strand, within Dsui_1946 at 2058.856 kb on - strand, within Dsui_1946 at 2058.856 kb on - strand, within Dsui_1946 at 2058.936 kb on + strand, within Dsui_1946
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,057,182 - -2.1 2,057,205 + -1.4 2,057,220 - -0.8 2,057,262 + -1.5 2,057,355 + Dsui_1944 0.33 -1.8 2,057,360 + Dsui_1944 0.35 -1.5 2,057,365 + Dsui_1944 0.36 -0.5 2,057,373 - +1.2 2,057,437 + Dsui_1944 0.60 -2.4 2,057,443 + Dsui_1944 0.62 -2.1 2,057,486 + Dsui_1944 0.76 -0.8 2,057,507 + Dsui_1944 0.83 -1.3 2,057,510 - -0.8 2,057,519 + Dsui_1944 0.87 -1.9 2,057,521 + Dsui_1944 0.88 -1.1 2,057,525 + Dsui_1944 0.89 -1.2 2,057,534 - -1.8 2,057,565 - +0.5 2,057,570 + -0.6 2,057,575 + -2.8 2,057,600 + -1.2 2,057,600 + -1.1 2,057,601 + -0.7 2,057,608 - -0.8 2,057,609 - +0.2 2,057,646 - -0.6 2,057,647 - +0.3 2,057,653 + -1.1 2,057,723 + Dsui_1945 0.25 -1.1 2,057,774 - Dsui_1945 0.40 -1.2 2,057,821 - Dsui_1945 0.55 -1.1 2,057,829 - Dsui_1945 0.57 +1.9 2,057,842 + Dsui_1945 0.61 -0.5 2,058,075 + -0.5 2,058,133 + Dsui_1946 0.14 -0.1 2,058,271 - Dsui_1946 0.26 -2.0 2,058,321 + Dsui_1946 0.30 -0.3 2,058,377 + Dsui_1946 0.35 -0.1 2,058,433 + Dsui_1946 0.40 -0.0 2,058,470 - Dsui_1946 0.43 -0.8 2,058,470 - Dsui_1946 0.43 -1.5 2,058,501 + Dsui_1946 0.46 +0.3 2,058,501 + Dsui_1946 0.46 -1.2 2,058,509 - -0.6 2,058,638 + Dsui_1946 0.58 -0.5 2,058,683 + Dsui_1946 0.61 -0.9 2,058,739 + Dsui_1946 0.66 +0.4 2,058,811 + Dsui_1946 0.72 -0.6 2,058,856 - Dsui_1946 0.76 -0.9 2,058,856 - Dsui_1946 0.76 +0.2 2,058,936 + Dsui_1946 0.83 -0.1
Or see this region's nucleotide sequence