Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1930 and Dsui_1931 overlap by 8 nucleotides Dsui_1931 and Dsui_1932 are separated by 166 nucleotides Dsui_1932 and Dsui_1933 are separated by 487 nucleotides
Dsui_1930: Dsui_1930 - transcriptional regulator, at 2,040,294 to 2,041,322
_1930
Dsui_1931: Dsui_1931 - transcriptional regulator, at 2,041,315 to 2,041,821
_1931
Dsui_1932: Dsui_1932 - transcriptional regulator, at 2,041,988 to 2,042,491
_1932
Dsui_1933: Dsui_1933 - 2-phosphoglycolate phosphatase, at 2,042,979 to 2,043,638
_1933
Position (kb)
2041
2042
2043 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2040.994 kb on - strand, within Dsui_1930 at 2041.018 kb on - strand, within Dsui_1930 at 2041.042 kb on - strand, within Dsui_1930 at 2041.253 kb on - strand at 2041.278 kb on + strand at 2041.297 kb on + strand at 2041.317 kb on + strand at 2041.527 kb on + strand, within Dsui_1931 at 2041.553 kb on - strand at 2041.579 kb on - strand at 2041.637 kb on - strand at 2041.651 kb on + strand, within Dsui_1931 at 2041.659 kb on - strand, within Dsui_1931 at 2041.663 kb on + strand, within Dsui_1931 at 2041.765 kb on + strand, within Dsui_1931 at 2041.773 kb on - strand at 2041.773 kb on - strand at 2041.786 kb on + strand at 2041.796 kb on - strand at 2041.825 kb on - strand at 2041.831 kb on - strand at 2041.914 kb on - strand at 2041.919 kb on - strand at 2041.958 kb on - strand at 2042.187 kb on - strand, within Dsui_1932 at 2042.214 kb on + strand, within Dsui_1932 at 2042.214 kb on + strand, within Dsui_1932 at 2042.406 kb on - strand, within Dsui_1932 at 2042.406 kb on - strand, within Dsui_1932 at 2042.406 kb on - strand, within Dsui_1932 at 2042.502 kb on - strand at 2042.512 kb on - strand at 2042.545 kb on - strand at 2042.570 kb on + strand at 2042.570 kb on + strand at 2042.578 kb on - strand at 2042.893 kb on - strand at 2042.895 kb on + strand at 2042.928 kb on - strand at 2042.935 kb on - strand at 2042.947 kb on + strand at 2043.048 kb on - strand, within Dsui_1933 at 2043.061 kb on + strand, within Dsui_1933 at 2043.103 kb on + strand at 2043.146 kb on + strand at 2043.146 kb on + strand, within Dsui_1933 at 2043.174 kb on - strand, within Dsui_1933 at 2043.256 kb on + strand, within Dsui_1933 at 2043.380 kb on + strand, within Dsui_1933 at 2043.388 kb on - strand, within Dsui_1933 at 2043.406 kb on + strand, within Dsui_1933 at 2043.419 kb on - strand, within Dsui_1933 at 2043.444 kb on + strand, within Dsui_1933
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,040,994 - Dsui_1930 0.68 +0.2 2,041,018 - Dsui_1930 0.70 -1.1 2,041,042 - Dsui_1930 0.73 +0.6 2,041,253 - +0.6 2,041,278 + -0.6 2,041,297 + -1.2 2,041,317 + -0.1 2,041,527 + Dsui_1931 0.42 -3.2 2,041,553 - +2.2 2,041,579 - -0.4 2,041,637 - +0.6 2,041,651 + Dsui_1931 0.66 -1.8 2,041,659 - Dsui_1931 0.68 -1.8 2,041,663 + Dsui_1931 0.69 -1.5 2,041,765 + Dsui_1931 0.89 -3.4 2,041,773 - -0.8 2,041,773 - +1.6 2,041,786 + -2.9 2,041,796 - -1.7 2,041,825 - -0.5 2,041,831 - +0.9 2,041,914 - -0.5 2,041,919 - +0.2 2,041,958 - -0.1 2,042,187 - Dsui_1932 0.39 -1.5 2,042,214 + Dsui_1932 0.45 -2.7 2,042,214 + Dsui_1932 0.45 -1.6 2,042,406 - Dsui_1932 0.83 -2.7 2,042,406 - Dsui_1932 0.83 -2.4 2,042,406 - Dsui_1932 0.83 -1.6 2,042,502 - -1.0 2,042,512 - -0.0 2,042,545 - +0.0 2,042,570 + +0.9 2,042,570 + +0.2 2,042,578 - +0.3 2,042,893 - -0.3 2,042,895 + +0.0 2,042,928 - +0.1 2,042,935 - +0.1 2,042,947 + -1.0 2,043,048 - Dsui_1933 0.10 -0.5 2,043,061 + Dsui_1933 0.12 -0.4 2,043,103 + +0.6 2,043,146 + +0.6 2,043,146 + Dsui_1933 0.25 +0.0 2,043,174 - Dsui_1933 0.30 -0.5 2,043,256 + Dsui_1933 0.42 +1.8 2,043,380 + Dsui_1933 0.61 -0.9 2,043,388 - Dsui_1933 0.62 -0.2 2,043,406 + Dsui_1933 0.65 +0.1 2,043,419 - Dsui_1933 0.67 -0.2 2,043,444 + Dsui_1933 0.70 +0.1
Or see this region's nucleotide sequence