Strain Fitness in Dechlorosoma suillum PS around Dsui_1928

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1927 and Dsui_1928 are separated by 238 nucleotidesDsui_1928 and Dsui_1929 are separated by 25 nucleotides Dsui_1927: Dsui_1927 - hypothetical protein, at 2,037,809 to 2,038,468 _1927 Dsui_1928: Dsui_1928 - cytochrome c, mono- and diheme variants family, at 2,038,707 to 2,039,060 _1928 Dsui_1929: Dsui_1929 - Prokaryotic membrane lipoprotein lipid attachment site/Cytochrome D1 heme domain protein, at 2,039,086 to 2,040,279 _1929 Position (kb) 2038 2039 2040Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2037.715 kb on + strandat 2037.734 kb on + strandat 2037.747 kb on - strandat 2037.747 kb on - strandat 2037.775 kb on - strandat 2037.777 kb on + strandat 2037.793 kb on + strandat 2037.793 kb on + strandat 2037.793 kb on + strandat 2037.801 kb on - strandat 2037.906 kb on - strandat 2037.907 kb on + strand, within Dsui_1927at 2037.910 kb on + strand, within Dsui_1927at 2037.910 kb on + strandat 2037.912 kb on + strand, within Dsui_1927at 2037.912 kb on + strand, within Dsui_1927at 2037.912 kb on + strand, within Dsui_1927at 2037.912 kb on + strandat 2037.912 kb on + strand, within Dsui_1927at 2037.920 kb on - strand, within Dsui_1927at 2037.920 kb on - strand, within Dsui_1927at 2037.920 kb on - strand, within Dsui_1927at 2037.920 kb on - strand, within Dsui_1927at 2037.920 kb on - strand, within Dsui_1927at 2037.920 kb on - strand, within Dsui_1927at 2037.920 kb on - strand, within Dsui_1927at 2037.920 kb on - strand, within Dsui_1927at 2037.925 kb on - strand, within Dsui_1927at 2037.927 kb on - strand, within Dsui_1927at 2037.929 kb on + strand, within Dsui_1927at 2037.931 kb on + strandat 2037.931 kb on + strand, within Dsui_1927at 2037.939 kb on - strand, within Dsui_1927at 2037.939 kb on - strand, within Dsui_1927at 2037.939 kb on - strand, within Dsui_1927at 2037.939 kb on - strand, within Dsui_1927at 2037.939 kb on - strand, within Dsui_1927at 2038.006 kb on - strand, within Dsui_1927at 2038.020 kb on - strand, within Dsui_1927at 2038.063 kb on + strand, within Dsui_1927at 2038.066 kb on + strand, within Dsui_1927at 2038.071 kb on - strand, within Dsui_1927at 2038.071 kb on - strand, within Dsui_1927at 2038.094 kb on - strand, within Dsui_1927at 2038.138 kb on - strand, within Dsui_1927at 2038.143 kb on - strand, within Dsui_1927at 2038.160 kb on - strand, within Dsui_1927at 2038.191 kb on + strand, within Dsui_1927at 2038.241 kb on - strand, within Dsui_1927at 2038.329 kb on - strand, within Dsui_1927at 2038.367 kb on - strandat 2038.408 kb on - strandat 2038.434 kb on - strandat 2038.438 kb on + strandat 2038.458 kb on - strandat 2038.485 kb on - strandat 2038.532 kb on + strandat 2038.545 kb on + strandat 2038.545 kb on + strandat 2038.548 kb on - strandat 2038.550 kb on + strandat 2038.553 kb on - strandat 2038.555 kb on + strandat 2038.558 kb on - strandat 2038.561 kb on + strandat 2038.563 kb on - strandat 2038.566 kb on + strandat 2038.568 kb on - strandat 2038.569 kb on - strandat 2038.574 kb on - strandat 2038.577 kb on + strandat 2038.755 kb on - strandat 2038.755 kb on - strand, within Dsui_1928at 2038.812 kb on + strand, within Dsui_1928at 2038.874 kb on - strand, within Dsui_1928at 2038.874 kb on - strand, within Dsui_1928at 2038.885 kb on + strand, within Dsui_1928at 2038.891 kb on + strand, within Dsui_1928at 2038.905 kb on + strand, within Dsui_1928at 2038.913 kb on - strandat 2038.920 kb on - strand, within Dsui_1928at 2038.945 kb on + strand, within Dsui_1928at 2038.980 kb on - strandat 2039.033 kb on + strandat 2039.142 kb on - strandat 2039.234 kb on - strand, within Dsui_1929at 2039.312 kb on + strand, within Dsui_1929at 2039.322 kb on + strand, within Dsui_1929at 2039.353 kb on + strand, within Dsui_1929at 2039.451 kb on + strand, within Dsui_1929at 2039.480 kb on + strand, within Dsui_1929at 2039.504 kb on + strand, within Dsui_1929at 2039.837 kb on - strand, within Dsui_1929at 2039.839 kb on + strand, within Dsui_1929at 2039.862 kb on + strand, within Dsui_1929at 2039.962 kb on + strand, within Dsui_1929

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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2,037,715 + -0.1
2,037,734 + -0.6
2,037,747 - -1.0
2,037,747 - -0.1
2,037,775 - -0.1
2,037,777 + +0.4
2,037,793 + -0.1
2,037,793 + +3.8
2,037,793 + -0.4
2,037,801 - +0.7
2,037,906 - +0.9
2,037,907 + Dsui_1927 0.15 -0.5
2,037,910 + Dsui_1927 0.15 -0.4
2,037,910 + -0.1
2,037,912 + Dsui_1927 0.16 -0.9
2,037,912 + Dsui_1927 0.16 -1.7
2,037,912 + Dsui_1927 0.16 -0.8
2,037,912 + +0.2
2,037,912 + Dsui_1927 0.16 +0.5
2,037,920 - Dsui_1927 0.17 -0.8
2,037,920 - Dsui_1927 0.17 +0.4
2,037,920 - Dsui_1927 0.17 -1.4
2,037,920 - Dsui_1927 0.17 +0.3
2,037,920 - Dsui_1927 0.17 -0.2
2,037,920 - Dsui_1927 0.17 -0.5
2,037,920 - Dsui_1927 0.17 +0.2
2,037,920 - Dsui_1927 0.17 -0.6
2,037,925 - Dsui_1927 0.18 +0.4
2,037,927 - Dsui_1927 0.18 -0.5
2,037,929 + Dsui_1927 0.18 -0.9
2,037,931 + -0.6
2,037,931 + Dsui_1927 0.18 -0.1
2,037,939 - Dsui_1927 0.20 +0.2
2,037,939 - Dsui_1927 0.20 -0.0
2,037,939 - Dsui_1927 0.20 -0.6
2,037,939 - Dsui_1927 0.20 +1.1
2,037,939 - Dsui_1927 0.20 -1.1
2,038,006 - Dsui_1927 0.30 +0.6
2,038,020 - Dsui_1927 0.32 -0.1
2,038,063 + Dsui_1927 0.38 -2.2
2,038,066 + Dsui_1927 0.39 -0.6
2,038,071 - Dsui_1927 0.40 -0.8
2,038,071 - Dsui_1927 0.40 -0.1
2,038,094 - Dsui_1927 0.43 -0.1
2,038,138 - Dsui_1927 0.50 -0.3
2,038,143 - Dsui_1927 0.51 -0.5
2,038,160 - Dsui_1927 0.53 -0.1
2,038,191 + Dsui_1927 0.58 +1.6
2,038,241 - Dsui_1927 0.65 -0.4
2,038,329 - Dsui_1927 0.79 -0.2
2,038,367 - +0.4
2,038,408 - -0.4
2,038,434 - +0.4
2,038,438 + -1.0
2,038,458 - -0.1
2,038,485 - -1.2
2,038,532 + +1.2
2,038,545 + -0.1
2,038,545 + +1.5
2,038,548 - -0.8
2,038,550 + -1.0
2,038,553 - +1.0
2,038,555 + -0.1
2,038,558 - +0.1
2,038,561 + -0.4
2,038,563 - +2.2
2,038,566 + +0.3
2,038,568 - +0.3
2,038,569 - +0.6
2,038,574 - -0.6
2,038,577 + +0.1
2,038,755 - +1.2
2,038,755 - Dsui_1928 0.14 -1.2
2,038,812 + Dsui_1928 0.30 -1.4
2,038,874 - Dsui_1928 0.47 -0.8
2,038,874 - Dsui_1928 0.47 -1.1
2,038,885 + Dsui_1928 0.50 -1.8
2,038,891 + Dsui_1928 0.52 -2.0
2,038,905 + Dsui_1928 0.56 -2.4
2,038,913 - +2.2
2,038,920 - Dsui_1928 0.60 -0.3
2,038,945 + Dsui_1928 0.67 -0.9
2,038,980 - -0.1
2,039,033 + -1.0
2,039,142 - -0.6
2,039,234 - Dsui_1929 0.12 -2.8
2,039,312 + Dsui_1929 0.19 -1.7
2,039,322 + Dsui_1929 0.20 -2.3
2,039,353 + Dsui_1929 0.22 -0.7
2,039,451 + Dsui_1929 0.31 -2.5
2,039,480 + Dsui_1929 0.33 -1.7
2,039,504 + Dsui_1929 0.35 -0.6
2,039,837 - Dsui_1929 0.63 -1.1
2,039,839 + Dsui_1929 0.63 -2.3
2,039,862 + Dsui_1929 0.65 -1.8
2,039,962 + Dsui_1929 0.73 -2.4

Or see this region's nucleotide sequence