Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1927 and Dsui_1928 are separated by 238 nucleotides Dsui_1928 and Dsui_1929 are separated by 25 nucleotides
Dsui_1927: Dsui_1927 - hypothetical protein, at 2,037,809 to 2,038,468
_1927
Dsui_1928: Dsui_1928 - cytochrome c, mono- and diheme variants family, at 2,038,707 to 2,039,060
_1928
Dsui_1929: Dsui_1929 - Prokaryotic membrane lipoprotein lipid attachment site/Cytochrome D1 heme domain protein, at 2,039,086 to 2,040,279
_1929
Position (kb)
2038
2039
2040 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2037.715 kb on + strand at 2037.734 kb on + strand at 2037.747 kb on - strand at 2037.747 kb on - strand at 2037.775 kb on - strand at 2037.777 kb on + strand at 2037.793 kb on + strand at 2037.793 kb on + strand at 2037.793 kb on + strand at 2037.801 kb on - strand at 2037.906 kb on - strand at 2037.907 kb on + strand, within Dsui_1927 at 2037.910 kb on + strand, within Dsui_1927 at 2037.910 kb on + strand at 2037.912 kb on + strand, within Dsui_1927 at 2037.912 kb on + strand, within Dsui_1927 at 2037.912 kb on + strand, within Dsui_1927 at 2037.912 kb on + strand at 2037.912 kb on + strand, within Dsui_1927 at 2037.920 kb on - strand, within Dsui_1927 at 2037.920 kb on - strand, within Dsui_1927 at 2037.920 kb on - strand, within Dsui_1927 at 2037.920 kb on - strand, within Dsui_1927 at 2037.920 kb on - strand, within Dsui_1927 at 2037.920 kb on - strand, within Dsui_1927 at 2037.920 kb on - strand, within Dsui_1927 at 2037.920 kb on - strand, within Dsui_1927 at 2037.925 kb on - strand, within Dsui_1927 at 2037.927 kb on - strand, within Dsui_1927 at 2037.929 kb on + strand, within Dsui_1927 at 2037.931 kb on + strand at 2037.931 kb on + strand, within Dsui_1927 at 2037.939 kb on - strand, within Dsui_1927 at 2037.939 kb on - strand, within Dsui_1927 at 2037.939 kb on - strand, within Dsui_1927 at 2037.939 kb on - strand, within Dsui_1927 at 2037.939 kb on - strand, within Dsui_1927 at 2038.006 kb on - strand, within Dsui_1927 at 2038.020 kb on - strand, within Dsui_1927 at 2038.063 kb on + strand, within Dsui_1927 at 2038.066 kb on + strand, within Dsui_1927 at 2038.071 kb on - strand, within Dsui_1927 at 2038.071 kb on - strand, within Dsui_1927 at 2038.094 kb on - strand, within Dsui_1927 at 2038.138 kb on - strand, within Dsui_1927 at 2038.143 kb on - strand, within Dsui_1927 at 2038.160 kb on - strand, within Dsui_1927 at 2038.191 kb on + strand, within Dsui_1927 at 2038.241 kb on - strand, within Dsui_1927 at 2038.329 kb on - strand, within Dsui_1927 at 2038.367 kb on - strand at 2038.408 kb on - strand at 2038.434 kb on - strand at 2038.438 kb on + strand at 2038.458 kb on - strand at 2038.485 kb on - strand at 2038.532 kb on + strand at 2038.545 kb on + strand at 2038.545 kb on + strand at 2038.548 kb on - strand at 2038.550 kb on + strand at 2038.553 kb on - strand at 2038.555 kb on + strand at 2038.558 kb on - strand at 2038.561 kb on + strand at 2038.563 kb on - strand at 2038.566 kb on + strand at 2038.568 kb on - strand at 2038.569 kb on - strand at 2038.574 kb on - strand at 2038.577 kb on + strand at 2038.755 kb on - strand at 2038.755 kb on - strand, within Dsui_1928 at 2038.812 kb on + strand, within Dsui_1928 at 2038.874 kb on - strand, within Dsui_1928 at 2038.874 kb on - strand, within Dsui_1928 at 2038.885 kb on + strand, within Dsui_1928 at 2038.891 kb on + strand, within Dsui_1928 at 2038.905 kb on + strand, within Dsui_1928 at 2038.913 kb on - strand at 2038.920 kb on - strand, within Dsui_1928 at 2038.945 kb on + strand, within Dsui_1928 at 2038.980 kb on - strand at 2039.033 kb on + strand at 2039.142 kb on - strand at 2039.234 kb on - strand, within Dsui_1929 at 2039.312 kb on + strand, within Dsui_1929 at 2039.322 kb on + strand, within Dsui_1929 at 2039.353 kb on + strand, within Dsui_1929 at 2039.451 kb on + strand, within Dsui_1929 at 2039.480 kb on + strand, within Dsui_1929 at 2039.504 kb on + strand, within Dsui_1929 at 2039.837 kb on - strand, within Dsui_1929 at 2039.839 kb on + strand, within Dsui_1929 at 2039.862 kb on + strand, within Dsui_1929 at 2039.962 kb on + strand, within Dsui_1929
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 2,037,715 + -0.1 2,037,734 + -0.6 2,037,747 - -1.0 2,037,747 - -0.1 2,037,775 - -0.1 2,037,777 + +0.4 2,037,793 + -0.1 2,037,793 + +3.8 2,037,793 + -0.4 2,037,801 - +0.7 2,037,906 - +0.9 2,037,907 + Dsui_1927 0.15 -0.5 2,037,910 + Dsui_1927 0.15 -0.4 2,037,910 + -0.1 2,037,912 + Dsui_1927 0.16 -0.9 2,037,912 + Dsui_1927 0.16 -1.7 2,037,912 + Dsui_1927 0.16 -0.8 2,037,912 + +0.2 2,037,912 + Dsui_1927 0.16 +0.5 2,037,920 - Dsui_1927 0.17 -0.8 2,037,920 - Dsui_1927 0.17 +0.4 2,037,920 - Dsui_1927 0.17 -1.4 2,037,920 - Dsui_1927 0.17 +0.3 2,037,920 - Dsui_1927 0.17 -0.2 2,037,920 - Dsui_1927 0.17 -0.5 2,037,920 - Dsui_1927 0.17 +0.2 2,037,920 - Dsui_1927 0.17 -0.6 2,037,925 - Dsui_1927 0.18 +0.4 2,037,927 - Dsui_1927 0.18 -0.5 2,037,929 + Dsui_1927 0.18 -0.9 2,037,931 + -0.6 2,037,931 + Dsui_1927 0.18 -0.1 2,037,939 - Dsui_1927 0.20 +0.2 2,037,939 - Dsui_1927 0.20 -0.0 2,037,939 - Dsui_1927 0.20 -0.6 2,037,939 - Dsui_1927 0.20 +1.1 2,037,939 - Dsui_1927 0.20 -1.1 2,038,006 - Dsui_1927 0.30 +0.6 2,038,020 - Dsui_1927 0.32 -0.1 2,038,063 + Dsui_1927 0.38 -2.2 2,038,066 + Dsui_1927 0.39 -0.6 2,038,071 - Dsui_1927 0.40 -0.8 2,038,071 - Dsui_1927 0.40 -0.1 2,038,094 - Dsui_1927 0.43 -0.1 2,038,138 - Dsui_1927 0.50 -0.3 2,038,143 - Dsui_1927 0.51 -0.5 2,038,160 - Dsui_1927 0.53 -0.1 2,038,191 + Dsui_1927 0.58 +1.6 2,038,241 - Dsui_1927 0.65 -0.4 2,038,329 - Dsui_1927 0.79 -0.2 2,038,367 - +0.4 2,038,408 - -0.4 2,038,434 - +0.4 2,038,438 + -1.0 2,038,458 - -0.1 2,038,485 - -1.2 2,038,532 + +1.2 2,038,545 + -0.1 2,038,545 + +1.5 2,038,548 - -0.8 2,038,550 + -1.0 2,038,553 - +1.0 2,038,555 + -0.1 2,038,558 - +0.1 2,038,561 + -0.4 2,038,563 - +2.2 2,038,566 + +0.3 2,038,568 - +0.3 2,038,569 - +0.6 2,038,574 - -0.6 2,038,577 + +0.1 2,038,755 - +1.2 2,038,755 - Dsui_1928 0.14 -1.2 2,038,812 + Dsui_1928 0.30 -1.4 2,038,874 - Dsui_1928 0.47 -0.8 2,038,874 - Dsui_1928 0.47 -1.1 2,038,885 + Dsui_1928 0.50 -1.8 2,038,891 + Dsui_1928 0.52 -2.0 2,038,905 + Dsui_1928 0.56 -2.4 2,038,913 - +2.2 2,038,920 - Dsui_1928 0.60 -0.3 2,038,945 + Dsui_1928 0.67 -0.9 2,038,980 - -0.1 2,039,033 + -1.0 2,039,142 - -0.6 2,039,234 - Dsui_1929 0.12 -2.8 2,039,312 + Dsui_1929 0.19 -1.7 2,039,322 + Dsui_1929 0.20 -2.3 2,039,353 + Dsui_1929 0.22 -0.7 2,039,451 + Dsui_1929 0.31 -2.5 2,039,480 + Dsui_1929 0.33 -1.7 2,039,504 + Dsui_1929 0.35 -0.6 2,039,837 - Dsui_1929 0.63 -1.1 2,039,839 + Dsui_1929 0.63 -2.3 2,039,862 + Dsui_1929 0.65 -1.8 2,039,962 + Dsui_1929 0.73 -2.4
Or see this region's nucleotide sequence