Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1825 and Dsui_1826 are separated by 72 nucleotides Dsui_1826 and Dsui_1827 are separated by 211 nucleotides Dsui_1827 and Dsui_1828 are separated by 24 nucleotides Dsui_1828 and Dsui_1829 are separated by 122 nucleotides Dsui_1829 and Dsui_1830 are separated by 45 nucleotides
Dsui_1825: Dsui_1825 - NAD(P)H-dependent nitrite reductase, large subunit, at 1,924,142 to 1,926,580
_1825
Dsui_1826: Dsui_1826 - NAD(P)H-dependent nitrite reductase, small subunit, at 1,926,653 to 1,926,961
_1826
Dsui_1827: Dsui_1827 - hypothetical protein, at 1,927,173 to 1,927,541
_1827
Dsui_1828: Dsui_1828 - response regulator with putative antiterminator output domain, at 1,927,566 to 1,928,141
_1828
Dsui_1829: Dsui_1829 - hemerythrin HHE cation binding domain-containing protein, at 1,928,264 to 1,928,659
_1829
Dsui_1830: Dsui_1830 - Yip1 domain protein, at 1,928,705 to 1,929,304
_1830
Position (kb)
1927
1928
1929 Strain fitness (log2 ratio)
-2
-1
0
1 at 1926.611 kb on + strand at 1926.721 kb on - strand at 1926.737 kb on + strand at 1926.845 kb on + strand at 1926.899 kb on - strand, within Dsui_1826 at 1926.909 kb on - strand, within Dsui_1826 at 1926.950 kb on + strand at 1926.957 kb on + strand at 1927.069 kb on + strand at 1927.086 kb on + strand at 1927.146 kb on + strand at 1927.165 kb on + strand at 1927.167 kb on - strand at 1927.257 kb on + strand, within Dsui_1827 at 1927.382 kb on + strand, within Dsui_1827 at 1927.427 kb on + strand, within Dsui_1827 at 1927.556 kb on + strand at 1927.564 kb on - strand at 1927.616 kb on - strand at 1927.628 kb on + strand, within Dsui_1828 at 1927.628 kb on + strand, within Dsui_1828 at 1927.669 kb on - strand at 1927.687 kb on + strand, within Dsui_1828 at 1927.732 kb on + strand, within Dsui_1828 at 1927.873 kb on + strand, within Dsui_1828 at 1927.881 kb on - strand, within Dsui_1828 at 1927.941 kb on - strand, within Dsui_1828 at 1927.941 kb on - strand, within Dsui_1828 at 1928.008 kb on - strand, within Dsui_1828 at 1928.008 kb on - strand at 1928.008 kb on - strand, within Dsui_1828 at 1928.047 kb on - strand at 1928.055 kb on + strand, within Dsui_1828 at 1928.167 kb on + strand at 1928.238 kb on + strand at 1928.247 kb on - strand at 1928.313 kb on + strand, within Dsui_1829 at 1928.502 kb on - strand, within Dsui_1829 at 1928.574 kb on + strand, within Dsui_1829 at 1928.579 kb on + strand, within Dsui_1829 at 1928.579 kb on + strand, within Dsui_1829 at 1928.710 kb on - strand at 1928.758 kb on + strand at 1928.843 kb on + strand, within Dsui_1830 at 1928.929 kb on + strand, within Dsui_1830 at 1928.931 kb on - strand, within Dsui_1830 at 1929.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,926,611 + +0.6 1,926,721 - +0.6 1,926,737 + +1.2 1,926,845 + +1.2 1,926,899 - Dsui_1826 0.80 -1.1 1,926,909 - Dsui_1826 0.83 -1.1 1,926,950 + +1.2 1,926,957 + -0.6 1,927,069 + +0.1 1,927,086 + -0.2 1,927,146 + -0.2 1,927,165 + -0.4 1,927,167 - -0.8 1,927,257 + Dsui_1827 0.23 -1.4 1,927,382 + Dsui_1827 0.57 -0.3 1,927,427 + Dsui_1827 0.69 +0.2 1,927,556 + +0.5 1,927,564 - -0.1 1,927,616 - -1.8 1,927,628 + Dsui_1828 0.11 -0.7 1,927,628 + Dsui_1828 0.11 -0.3 1,927,669 - +0.6 1,927,687 + Dsui_1828 0.21 -0.2 1,927,732 + Dsui_1828 0.29 -0.2 1,927,873 + Dsui_1828 0.53 -0.1 1,927,881 - Dsui_1828 0.55 -2.4 1,927,941 - Dsui_1828 0.65 -0.6 1,927,941 - Dsui_1828 0.65 -0.6 1,928,008 - Dsui_1828 0.77 -0.5 1,928,008 - -0.1 1,928,008 - Dsui_1828 0.77 +0.2 1,928,047 - +0.2 1,928,055 + Dsui_1828 0.85 -0.1 1,928,167 + -0.8 1,928,238 + -0.7 1,928,247 - +1.1 1,928,313 + Dsui_1829 0.12 -1.7 1,928,502 - Dsui_1829 0.60 -2.0 1,928,574 + Dsui_1829 0.78 +0.2 1,928,579 + Dsui_1829 0.80 +0.3 1,928,579 + Dsui_1829 0.80 +0.6 1,928,710 - +0.4 1,928,758 + +0.1 1,928,843 + Dsui_1830 0.23 -1.1 1,928,929 + Dsui_1830 0.37 -0.2 1,928,931 - Dsui_1830 0.38 -1.4 1,929,010 - +0.6
Or see this region's nucleotide sequence