Strain Fitness in Dechlorosoma suillum PS around Dsui_1459

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1457 and Dsui_1458 are separated by 101 nucleotidesDsui_1458 and Dsui_1459 are separated by 1 nucleotidesDsui_1459 and Dsui_1460 are separated by 140 nucleotides Dsui_1457: Dsui_1457 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,516,863 to 1,517,258 _1457 Dsui_1458: Dsui_1458 - phosphohistidine phosphatase SixA, at 1,517,360 to 1,517,851 _1458 Dsui_1459: Dsui_1459 - hypothetical protein, at 1,517,853 to 1,519,376 _1459 Dsui_1460: Dsui_1460 - cAMP-binding protein, at 1,519,517 to 1,520,209 _1460 Position (kb) 1517 1518 1519 1520Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1516.882 kb on + strandat 1516.887 kb on + strandat 1517.071 kb on + strand, within Dsui_1457at 1517.164 kb on - strandat 1517.318 kb on + strandat 1517.386 kb on + strandat 1517.407 kb on + strandat 1517.424 kb on + strand, within Dsui_1458at 1517.467 kb on - strand, within Dsui_1458at 1517.490 kb on + strand, within Dsui_1458at 1517.574 kb on + strand, within Dsui_1458at 1517.584 kb on + strand, within Dsui_1458at 1517.585 kb on + strand, within Dsui_1458at 1517.635 kb on + strand, within Dsui_1458at 1517.668 kb on + strand, within Dsui_1458at 1517.676 kb on - strand, within Dsui_1458at 1517.691 kb on - strand, within Dsui_1458at 1517.704 kb on + strand, within Dsui_1458at 1517.928 kb on - strandat 1517.991 kb on - strandat 1518.337 kb on - strand, within Dsui_1459at 1518.457 kb on - strand, within Dsui_1459at 1518.560 kb on - strand, within Dsui_1459at 1518.651 kb on + strand, within Dsui_1459at 1518.689 kb on - strand, within Dsui_1459at 1518.769 kb on + strand, within Dsui_1459at 1518.777 kb on - strand, within Dsui_1459at 1518.833 kb on + strand, within Dsui_1459at 1518.953 kb on + strand, within Dsui_1459at 1518.954 kb on + strandat 1519.019 kb on - strand, within Dsui_1459at 1519.119 kb on - strand, within Dsui_1459at 1519.219 kb on + strand, within Dsui_1459at 1519.227 kb on - strandat 1519.238 kb on + strandat 1519.244 kb on + strandat 1519.375 kb on + strandat 1519.515 kb on + strandat 1519.530 kb on - strandat 1519.636 kb on + strand, within Dsui_1460at 1519.679 kb on - strand, within Dsui_1460at 1519.764 kb on + strandat 1519.770 kb on - strand, within Dsui_1460at 1519.770 kb on - strand, within Dsui_1460at 1519.800 kb on - strand, within Dsui_1460at 1519.869 kb on + strand, within Dsui_1460at 1519.888 kb on - strand, within Dsui_1460at 1519.903 kb on + strand, within Dsui_1460at 1519.907 kb on - strand, within Dsui_1460at 1519.920 kb on + strand, within Dsui_1460at 1519.926 kb on + strandat 1519.928 kb on - strand, within Dsui_1460at 1519.940 kb on + strandat 1519.948 kb on - strand, within Dsui_1460at 1519.948 kb on - strand, within Dsui_1460at 1519.959 kb on + strand, within Dsui_1460at 1519.963 kb on + strandat 1519.966 kb on - strand, within Dsui_1460at 1519.966 kb on - strand, within Dsui_1460at 1519.966 kb on - strand, within Dsui_1460at 1519.967 kb on - strand, within Dsui_1460at 1519.997 kb on + strand, within Dsui_1460at 1520.005 kb on - strand, within Dsui_1460at 1520.027 kb on - strand, within Dsui_1460at 1520.044 kb on + strand, within Dsui_1460at 1520.252 kb on + strandat 1520.258 kb on - strandat 1520.258 kb on - strandat 1520.273 kb on + strandat 1520.363 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,516,882 + -0.3
1,516,887 + +1.4
1,517,071 + Dsui_1457 0.53 -0.9
1,517,164 - +1.2
1,517,318 + +0.5
1,517,386 + -0.1
1,517,407 + -0.8
1,517,424 + Dsui_1458 0.13 -1.0
1,517,467 - Dsui_1458 0.22 -0.0
1,517,490 + Dsui_1458 0.26 +0.9
1,517,574 + Dsui_1458 0.43 -0.6
1,517,584 + Dsui_1458 0.46 +0.4
1,517,585 + Dsui_1458 0.46 -2.4
1,517,635 + Dsui_1458 0.56 +0.0
1,517,668 + Dsui_1458 0.63 +0.2
1,517,676 - Dsui_1458 0.64 -1.2
1,517,691 - Dsui_1458 0.67 -0.1
1,517,704 + Dsui_1458 0.70 +0.5
1,517,928 - -0.7
1,517,991 - -0.8
1,518,337 - Dsui_1459 0.32 +1.2
1,518,457 - Dsui_1459 0.40 -0.0
1,518,560 - Dsui_1459 0.46 +1.4
1,518,651 + Dsui_1459 0.52 +1.0
1,518,689 - Dsui_1459 0.55 +0.3
1,518,769 + Dsui_1459 0.60 -1.2
1,518,777 - Dsui_1459 0.61 -0.7
1,518,833 + Dsui_1459 0.64 -1.1
1,518,953 + Dsui_1459 0.72 +0.0
1,518,954 + +0.6
1,519,019 - Dsui_1459 0.77 -1.2
1,519,119 - Dsui_1459 0.83 -0.4
1,519,219 + Dsui_1459 0.90 +1.5
1,519,227 - +0.3
1,519,238 + -0.7
1,519,244 + -0.2
1,519,375 + -0.0
1,519,515 + -0.2
1,519,530 - +0.7
1,519,636 + Dsui_1460 0.17 -3.9
1,519,679 - Dsui_1460 0.23 +0.6
1,519,764 + +0.2
1,519,770 - Dsui_1460 0.37 -1.8
1,519,770 - Dsui_1460 0.37 -3.2
1,519,800 - Dsui_1460 0.41 -4.2
1,519,869 + Dsui_1460 0.51 -1.1
1,519,888 - Dsui_1460 0.54 -4.2
1,519,903 + Dsui_1460 0.56 -3.2
1,519,907 - Dsui_1460 0.56 -2.7
1,519,920 + Dsui_1460 0.58 -3.1
1,519,926 + -0.8
1,519,928 - Dsui_1460 0.59 -3.4
1,519,940 + +0.2
1,519,948 - Dsui_1460 0.62 -1.1
1,519,948 - Dsui_1460 0.62 -2.8
1,519,959 + Dsui_1460 0.64 -1.2
1,519,963 + -0.1
1,519,966 - Dsui_1460 0.65 -3.2
1,519,966 - Dsui_1460 0.65 -2.1
1,519,966 - Dsui_1460 0.65 -1.1
1,519,967 - Dsui_1460 0.65 -3.1
1,519,997 + Dsui_1460 0.69 -3.4
1,520,005 - Dsui_1460 0.70 -3.4
1,520,027 - Dsui_1460 0.74 -2.0
1,520,044 + Dsui_1460 0.76 -0.1
1,520,252 + +0.6
1,520,258 - -1.2
1,520,258 - +2.2
1,520,273 + +0.6
1,520,363 - -0.9

Or see this region's nucleotide sequence