Strain Fitness in Dechlorosoma suillum PS around Dsui_1226

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1225 and Dsui_1226 are separated by 103 nucleotidesDsui_1226 and Dsui_1227 are separated by 250 nucleotides Dsui_1225: Dsui_1225 - sporulation related protein, at 1,281,412 to 1,282,305 _1225 Dsui_1226: Dsui_1226 - hypothetical protein, at 1,282,409 to 1,282,768 _1226 Dsui_1227: Dsui_1227 - DNA/RNA helicase, superfamily I, at 1,283,019 to 1,285,226 _1227 Position (kb) 1282 1283Strain fitness (log2 ratio) -2 -1 0 1 2at 1281.435 kb on + strandat 1281.436 kb on - strandat 1281.443 kb on + strandat 1281.501 kb on + strandat 1281.527 kb on + strand, within Dsui_1225at 1281.540 kb on - strand, within Dsui_1225at 1281.657 kb on + strand, within Dsui_1225at 1281.672 kb on - strand, within Dsui_1225at 1281.811 kb on - strandat 1281.843 kb on - strand, within Dsui_1225at 1281.864 kb on - strandat 1281.925 kb on + strand, within Dsui_1225at 1281.990 kb on + strand, within Dsui_1225at 1282.104 kb on + strand, within Dsui_1225at 1282.435 kb on + strandat 1282.461 kb on - strand, within Dsui_1226at 1282.533 kb on - strand, within Dsui_1226at 1282.544 kb on + strand, within Dsui_1226at 1282.579 kb on + strand, within Dsui_1226at 1282.618 kb on + strand, within Dsui_1226at 1282.777 kb on + strandat 1282.825 kb on - strandat 1282.843 kb on - strandat 1282.964 kb on + strandat 1282.969 kb on + strandat 1282.975 kb on + strandat 1282.983 kb on - strandat 1283.020 kb on + strandat 1283.054 kb on + strandat 1283.091 kb on + strandat 1283.257 kb on + strand, within Dsui_1227at 1283.493 kb on - strandat 1283.604 kb on - strandat 1283.694 kb on + strand, within Dsui_1227at 1283.719 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,281,435 + +0.2
1,281,436 - -0.1
1,281,443 + +0.1
1,281,501 + +0.1
1,281,527 + Dsui_1225 0.13 -0.4
1,281,540 - Dsui_1225 0.14 -0.7
1,281,657 + Dsui_1225 0.27 -0.4
1,281,672 - Dsui_1225 0.29 -0.3
1,281,811 - +1.1
1,281,843 - Dsui_1225 0.48 -0.1
1,281,864 - +2.1
1,281,925 + Dsui_1225 0.57 -1.9
1,281,990 + Dsui_1225 0.65 -0.9
1,282,104 + Dsui_1225 0.77 -1.3
1,282,435 + +0.9
1,282,461 - Dsui_1226 0.14 +0.4
1,282,533 - Dsui_1226 0.34 -0.9
1,282,544 + Dsui_1226 0.38 -0.4
1,282,579 + Dsui_1226 0.47 -1.5
1,282,618 + Dsui_1226 0.58 -0.5
1,282,777 + +2.1
1,282,825 - -0.8
1,282,843 - -1.6
1,282,964 + -0.0
1,282,969 + +0.8
1,282,975 + +0.1
1,282,983 - +1.1
1,283,020 + +0.2
1,283,054 + -0.0
1,283,091 + -0.7
1,283,257 + Dsui_1227 0.11 -0.5
1,283,493 - +2.1
1,283,604 - -0.7
1,283,694 + Dsui_1227 0.31 -0.9
1,283,719 - +1.1

Or see this region's nucleotide sequence