Strain Fitness in Dechlorosoma suillum PS around Dsui_1117

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1116 and Dsui_1117 are separated by 78 nucleotidesDsui_1117 and Dsui_1118 are separated by 123 nucleotides Dsui_1116: Dsui_1116 - methyl-accepting chemotaxis protein, at 1,163,824 to 1,165,431 _1116 Dsui_1117: Dsui_1117 - hemerythrin-like metal-binding domain-containing protein, at 1,165,510 to 1,165,926 _1117 Dsui_1118: Dsui_1118 - putative permease, at 1,166,050 to 1,166,946 _1118 Position (kb) 1165 1166Strain fitness (log2 ratio) -1 0 1at 1164.546 kb on + strand, within Dsui_1116at 1164.624 kb on + strand, within Dsui_1116at 1164.632 kb on - strand, within Dsui_1116at 1164.658 kb on + strand, within Dsui_1116at 1164.785 kb on - strand, within Dsui_1116at 1165.137 kb on + strand, within Dsui_1116at 1165.188 kb on + strand, within Dsui_1116at 1165.275 kb on + strandat 1165.709 kb on + strand, within Dsui_1117at 1165.736 kb on + strandat 1165.817 kb on - strand, within Dsui_1117at 1165.817 kb on - strand, within Dsui_1117at 1165.969 kb on - strandat 1166.010 kb on + strandat 1166.018 kb on - strandat 1166.062 kb on + strandat 1166.183 kb on - strand, within Dsui_1118at 1166.193 kb on - strand, within Dsui_1118at 1166.212 kb on + strand, within Dsui_1118at 1166.261 kb on + strand, within Dsui_1118at 1166.278 kb on + strand, within Dsui_1118at 1166.286 kb on - strand, within Dsui_1118at 1166.345 kb on - strand, within Dsui_1118at 1166.524 kb on + strand, within Dsui_1118at 1166.532 kb on - strand, within Dsui_1118at 1166.532 kb on - strand, within Dsui_1118at 1166.532 kb on - strand, within Dsui_1118at 1166.543 kb on + strand, within Dsui_1118at 1166.832 kb on + strand, within Dsui_1118at 1166.832 kb on + strand, within Dsui_1118at 1166.840 kb on - strand, within Dsui_1118

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
remove
1,164,546 + Dsui_1116 0.45 -0.3
1,164,624 + Dsui_1116 0.50 -0.5
1,164,632 - Dsui_1116 0.50 -0.9
1,164,658 + Dsui_1116 0.52 -0.2
1,164,785 - Dsui_1116 0.60 -0.6
1,165,137 + Dsui_1116 0.82 -0.4
1,165,188 + Dsui_1116 0.85 -0.1
1,165,275 + +0.1
1,165,709 + Dsui_1117 0.48 +0.1
1,165,736 + +0.8
1,165,817 - Dsui_1117 0.74 -0.5
1,165,817 - Dsui_1117 0.74 -0.7
1,165,969 - -0.7
1,166,010 + -0.7
1,166,018 - -0.7
1,166,062 + -0.2
1,166,183 - Dsui_1118 0.15 -0.1
1,166,193 - Dsui_1118 0.16 -0.1
1,166,212 + Dsui_1118 0.18 -0.6
1,166,261 + Dsui_1118 0.24 -1.0
1,166,278 + Dsui_1118 0.25 +0.2
1,166,286 - Dsui_1118 0.26 -0.9
1,166,345 - Dsui_1118 0.33 -0.4
1,166,524 + Dsui_1118 0.53 -1.1
1,166,532 - Dsui_1118 0.54 +0.6
1,166,532 - Dsui_1118 0.54 -1.0
1,166,532 - Dsui_1118 0.54 -0.7
1,166,543 + Dsui_1118 0.55 -1.1
1,166,832 + Dsui_1118 0.87 -1.6
1,166,832 + Dsui_1118 0.87 -1.1
1,166,840 - Dsui_1118 0.88 -0.9

Or see this region's nucleotide sequence