Strain Fitness in Dechlorosoma suillum PS around Dsui_1110

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1108 and Dsui_1109 are separated by 18 nucleotidesDsui_1109 and Dsui_1110 are separated by 15 nucleotidesDsui_1110 and Dsui_1111 are separated by 15 nucleotides Dsui_1108: Dsui_1108 - AMP-forming long-chain acyl-CoA synthetase, at 1,153,950 to 1,155,929 _1108 Dsui_1109: Dsui_1109 - ABC-type branched-chain amino acid transport systems, ATPase component, at 1,155,948 to 1,156,748 _1109 Dsui_1110: Dsui_1110 - branched-chain amino acid ABC-type transport system, permease component, at 1,156,764 to 1,157,657 _1110 Dsui_1111: Dsui_1111 - ABC-type branched-chain amino acid transport system, permease component, at 1,157,673 to 1,158,740 _1111 Position (kb) 1156 1157 1158Strain fitness (log2 ratio) -3 -2 -1 0 1at 1155.791 kb on - strandat 1155.814 kb on + strandat 1155.904 kb on + strandat 1155.924 kb on + strandat 1155.937 kb on - strandat 1156.224 kb on + strand, within Dsui_1109at 1156.258 kb on - strand, within Dsui_1109at 1156.258 kb on - strand, within Dsui_1109at 1156.277 kb on + strand, within Dsui_1109at 1156.285 kb on - strand, within Dsui_1109at 1156.285 kb on - strand, within Dsui_1109at 1156.394 kb on - strand, within Dsui_1109at 1156.420 kb on - strand, within Dsui_1109at 1156.459 kb on + strand, within Dsui_1109at 1156.502 kb on + strand, within Dsui_1109at 1156.613 kb on + strand, within Dsui_1109at 1156.631 kb on + strandat 1156.723 kb on + strandat 1156.730 kb on + strandat 1156.737 kb on - strandat 1156.950 kb on + strand, within Dsui_1110at 1157.127 kb on - strand, within Dsui_1110at 1157.127 kb on - strand, within Dsui_1110at 1157.127 kb on - strand, within Dsui_1110at 1157.395 kb on - strand, within Dsui_1110at 1157.395 kb on - strand, within Dsui_1110at 1157.592 kb on + strandat 1157.651 kb on + strandat 1157.659 kb on - strandat 1157.659 kb on - strandat 1157.696 kb on + strandat 1157.704 kb on - strandat 1157.767 kb on + strandat 1157.794 kb on + strand, within Dsui_1111at 1157.982 kb on - strand, within Dsui_1111at 1158.316 kb on - strand, within Dsui_1111at 1158.353 kb on + strand, within Dsui_1111at 1158.407 kb on + strand, within Dsui_1111at 1158.408 kb on + strand, within Dsui_1111at 1158.454 kb on + strand, within Dsui_1111at 1158.523 kb on + strand, within Dsui_1111at 1158.613 kb on + strand, within Dsui_1111

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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1,155,791 - +1.0
1,155,814 + -0.1
1,155,904 + -0.7
1,155,924 + -0.0
1,155,937 - -0.4
1,156,224 + Dsui_1109 0.34 -0.7
1,156,258 - Dsui_1109 0.39 -0.8
1,156,258 - Dsui_1109 0.39 +0.1
1,156,277 + Dsui_1109 0.41 +0.3
1,156,285 - Dsui_1109 0.42 -0.8
1,156,285 - Dsui_1109 0.42 -0.6
1,156,394 - Dsui_1109 0.56 -0.0
1,156,420 - Dsui_1109 0.59 -1.0
1,156,459 + Dsui_1109 0.64 +0.1
1,156,502 + Dsui_1109 0.69 -0.6
1,156,613 + Dsui_1109 0.83 -1.1
1,156,631 + -0.2
1,156,723 + -0.6
1,156,730 + -0.2
1,156,737 - +0.0
1,156,950 + Dsui_1110 0.21 -0.7
1,157,127 - Dsui_1110 0.41 -0.7
1,157,127 - Dsui_1110 0.41 -0.1
1,157,127 - Dsui_1110 0.41 -1.1
1,157,395 - Dsui_1110 0.71 -0.3
1,157,395 - Dsui_1110 0.71 -1.2
1,157,592 + -0.3
1,157,651 + +0.0
1,157,659 - -1.2
1,157,659 - -0.5
1,157,696 + -1.4
1,157,704 - -3.2
1,157,767 + -1.5
1,157,794 + Dsui_1111 0.11 -0.6
1,157,982 - Dsui_1111 0.29 -0.5
1,158,316 - Dsui_1111 0.60 -1.1
1,158,353 + Dsui_1111 0.64 -0.2
1,158,407 + Dsui_1111 0.69 -0.6
1,158,408 + Dsui_1111 0.69 -0.6
1,158,454 + Dsui_1111 0.73 -0.6
1,158,523 + Dsui_1111 0.80 -0.3
1,158,613 + Dsui_1111 0.88 -0.8

Or see this region's nucleotide sequence