Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1026 and Dsui_1027 overlap by 1 nucleotides Dsui_1027 and Dsui_1028 overlap by 11 nucleotides Dsui_1028 and Dsui_1029 are separated by 16 nucleotides Dsui_1029 and Dsui_1030 are separated by 78 nucleotides
Dsui_1026: Dsui_1026 - putative Zn-dependent peptidase, at 1,058,880 to 1,060,172
_1026
Dsui_1027: Dsui_1027 - RNA methyltransferase, RsmD family, at 1,060,172 to 1,060,780
_1027
Dsui_1028: Dsui_1028 - pantetheine-phosphate adenylyltransferase, at 1,060,770 to 1,061,267
_1028
Dsui_1029: Dsui_1029 - hypothetical protein, at 1,061,284 to 1,061,541
_1029
Dsui_1030: Dsui_1030 - dynamin family protein, at 1,061,620 to 1,063,575
_1030
Position (kb)
1060
1061
1062 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1059.780 kb on + strand at 1059.788 kb on - strand at 1059.810 kb on - strand, within Dsui_1026 at 1060.111 kb on - strand at 1060.328 kb on - strand at 1060.372 kb on - strand, within Dsui_1027 at 1060.407 kb on + strand, within Dsui_1027 at 1060.460 kb on + strand, within Dsui_1027 at 1060.460 kb on + strand, within Dsui_1027 at 1060.465 kb on + strand, within Dsui_1027 at 1060.551 kb on + strand, within Dsui_1027 at 1060.559 kb on - strand at 1060.767 kb on - strand at 1060.767 kb on - strand at 1061.638 kb on - strand at 1061.717 kb on + strand at 1061.725 kb on - strand at 1061.764 kb on + strand at 1061.884 kb on - strand, within Dsui_1030 at 1061.947 kb on - strand, within Dsui_1030 at 1061.983 kb on - strand, within Dsui_1030 at 1062.008 kb on - strand, within Dsui_1030 at 1062.060 kb on + strand, within Dsui_1030 at 1062.060 kb on + strand, within Dsui_1030 at 1062.068 kb on - strand, within Dsui_1030 at 1062.085 kb on - strand, within Dsui_1030 at 1062.153 kb on + strand, within Dsui_1030 at 1062.161 kb on - strand, within Dsui_1030 at 1062.237 kb on + strand, within Dsui_1030
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 1,059,780 + +0.6 1,059,788 - -0.4 1,059,810 - Dsui_1026 0.72 -1.0 1,060,111 - +1.2 1,060,328 - +3.2 1,060,372 - Dsui_1027 0.33 +0.4 1,060,407 + Dsui_1027 0.39 +0.5 1,060,460 + Dsui_1027 0.47 +0.0 1,060,460 + Dsui_1027 0.47 -1.9 1,060,465 + Dsui_1027 0.48 +0.3 1,060,551 + Dsui_1027 0.62 -0.5 1,060,559 - +2.2 1,060,767 - +0.3 1,060,767 - -0.9 1,061,638 - -0.4 1,061,717 + -0.4 1,061,725 - +0.3 1,061,764 + -0.4 1,061,884 - Dsui_1030 0.13 +0.1 1,061,947 - Dsui_1030 0.17 -0.1 1,061,983 - Dsui_1030 0.19 -1.1 1,062,008 - Dsui_1030 0.20 -0.1 1,062,060 + Dsui_1030 0.22 +0.6 1,062,060 + Dsui_1030 0.22 -0.1 1,062,068 - Dsui_1030 0.23 -0.0 1,062,085 - Dsui_1030 0.24 -0.2 1,062,153 + Dsui_1030 0.27 -0.3 1,062,161 - Dsui_1030 0.28 +0.1 1,062,237 + Dsui_1030 0.32 +0.8
Or see this region's nucleotide sequence