Strain Fitness in Dechlorosoma suillum PS around Dsui_0998

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0997 and Dsui_0998 are separated by 174 nucleotidesDsui_0998 and Dsui_0999 are separated by 125 nucleotides Dsui_0997: Dsui_0997 - methyl-accepting chemotaxis protein, at 1,023,346 to 1,025,373 _0997 Dsui_0998: Dsui_0998 - A/G-specific adenine glycosylase, at 1,025,548 to 1,026,609 _0998 Dsui_0999: Dsui_0999 - MoxR-like ATPase, at 1,026,735 to 1,027,658 _0999 Position (kb) 1025 1026 1027Strain fitness (log2 ratio) -1 0 1 2 3at 1024.561 kb on - strand, within Dsui_0997at 1024.643 kb on + strand, within Dsui_0997at 1024.650 kb on - strand, within Dsui_0997at 1024.675 kb on - strand, within Dsui_0997at 1024.675 kb on - strand, within Dsui_0997at 1024.725 kb on - strand, within Dsui_0997at 1024.764 kb on + strand, within Dsui_0997at 1024.780 kb on + strand, within Dsui_0997at 1024.833 kb on - strand, within Dsui_0997at 1024.834 kb on - strand, within Dsui_0997at 1024.888 kb on - strandat 1024.953 kb on + strand, within Dsui_0997at 1025.018 kb on + strand, within Dsui_0997at 1025.032 kb on - strand, within Dsui_0997at 1025.123 kb on + strand, within Dsui_0997at 1025.157 kb on + strand, within Dsui_0997at 1025.181 kb on + strandat 1025.280 kb on + strandat 1025.325 kb on - strandat 1025.419 kb on + strandat 1025.419 kb on + strandat 1025.427 kb on + strandat 1025.427 kb on - strandat 1025.432 kb on - strandat 1025.435 kb on - strandat 1025.460 kb on - strandat 1025.464 kb on + strandat 1025.464 kb on + strandat 1025.506 kb on + strandat 1025.514 kb on - strandat 1025.603 kb on + strandat 1025.728 kb on + strand, within Dsui_0998at 1025.736 kb on - strand, within Dsui_0998at 1025.751 kb on + strand, within Dsui_0998at 1025.864 kb on - strand, within Dsui_0998at 1025.954 kb on - strand, within Dsui_0998at 1026.015 kb on + strand, within Dsui_0998at 1026.020 kb on + strand, within Dsui_0998at 1026.164 kb on + strandat 1026.352 kb on - strand, within Dsui_0998at 1026.464 kb on - strand, within Dsui_0998at 1026.546 kb on - strandat 1026.607 kb on - strandat 1026.607 kb on - strandat 1026.615 kb on + strandat 1026.615 kb on + strandat 1026.680 kb on - strandat 1026.752 kb on - strandat 1026.776 kb on - strandat 1026.868 kb on + strand, within Dsui_0999at 1026.886 kb on - strandat 1026.893 kb on - strand, within Dsui_0999at 1026.946 kb on + strand, within Dsui_0999at 1027.019 kb on + strand, within Dsui_0999at 1027.121 kb on + strand, within Dsui_0999at 1027.124 kb on - strandat 1027.159 kb on + strandat 1027.247 kb on - strand, within Dsui_0999at 1027.426 kb on + strand, within Dsui_0999at 1027.462 kb on + strand, within Dsui_0999at 1027.468 kb on + strand, within Dsui_0999at 1027.472 kb on + strand, within Dsui_0999at 1027.488 kb on + strand, within Dsui_0999at 1027.491 kb on - strandat 1027.530 kb on - strandat 1027.560 kb on + strand, within Dsui_0999at 1027.562 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
remove
1,024,561 - Dsui_0997 0.60 -0.9
1,024,643 + Dsui_0997 0.64 -0.1
1,024,650 - Dsui_0997 0.64 -1.2
1,024,675 - Dsui_0997 0.66 -0.7
1,024,675 - Dsui_0997 0.66 -0.5
1,024,725 - Dsui_0997 0.68 -0.8
1,024,764 + Dsui_0997 0.70 -0.8
1,024,780 + Dsui_0997 0.71 -0.6
1,024,833 - Dsui_0997 0.73 +1.7
1,024,834 - Dsui_0997 0.73 -1.2
1,024,888 - +0.6
1,024,953 + Dsui_0997 0.79 -0.4
1,025,018 + Dsui_0997 0.82 +0.0
1,025,032 - Dsui_0997 0.83 -0.3
1,025,123 + Dsui_0997 0.88 -0.3
1,025,157 + Dsui_0997 0.89 +0.2
1,025,181 + +0.2
1,025,280 + -1.3
1,025,325 - +1.2
1,025,419 + -0.2
1,025,419 + -1.0
1,025,427 + -0.1
1,025,427 - +0.0
1,025,432 - +0.1
1,025,435 - -0.6
1,025,460 - -0.7
1,025,464 + -1.3
1,025,464 + -0.3
1,025,506 + +0.2
1,025,514 - -0.3
1,025,603 + -1.2
1,025,728 + Dsui_0998 0.17 +0.4
1,025,736 - Dsui_0998 0.18 -1.3
1,025,751 + Dsui_0998 0.19 -0.8
1,025,864 - Dsui_0998 0.30 -0.8
1,025,954 - Dsui_0998 0.38 -0.3
1,026,015 + Dsui_0998 0.44 -0.2
1,026,020 + Dsui_0998 0.44 +1.2
1,026,164 + +1.2
1,026,352 - Dsui_0998 0.76 -0.4
1,026,464 - Dsui_0998 0.86 -0.4
1,026,546 - -1.0
1,026,607 - +2.2
1,026,607 - -0.1
1,026,615 + -1.0
1,026,615 + +0.2
1,026,680 - -0.9
1,026,752 - +0.1
1,026,776 - +2.1
1,026,868 + Dsui_0999 0.14 -1.7
1,026,886 - +3.1
1,026,893 - Dsui_0999 0.17 -0.9
1,026,946 + Dsui_0999 0.23 -0.6
1,027,019 + Dsui_0999 0.31 -1.2
1,027,121 + Dsui_0999 0.42 -0.1
1,027,124 - +0.1
1,027,159 + +1.6
1,027,247 - Dsui_0999 0.55 +0.7
1,027,426 + Dsui_0999 0.75 +0.6
1,027,462 + Dsui_0999 0.79 +0.3
1,027,468 + Dsui_0999 0.79 +1.1
1,027,472 + Dsui_0999 0.80 +0.3
1,027,488 + Dsui_0999 0.81 +1.0
1,027,491 - +3.1
1,027,530 - +2.1
1,027,560 + Dsui_0999 0.89 +0.8
1,027,562 - +1.1

Or see this region's nucleotide sequence