Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0924 and Dsui_0925 are separated by 2 nucleotides Dsui_0925 and Dsui_0926 are separated by 66 nucleotides Dsui_0926 and Dsui_0927 are separated by 3 nucleotides Dsui_0927 and Dsui_0928 are separated by 181 nucleotides
Dsui_0924: Dsui_0924 - putative permease, at 952,283 to 953,743
_0924
Dsui_0925: Dsui_0925 - small redox-active disulfide protein 2, at 953,746 to 953,988
_0925
Dsui_0926: Dsui_0926 - fumarate hydratase, class II, at 954,055 to 955,446
_0926
Dsui_0927: Dsui_0927 - cytochrome c551/c552, at 955,450 to 955,836
_0927
Dsui_0928: Dsui_0928 - cytochrome c oxidase accessory protein FixG, at 956,018 to 957,433
_0928
Position (kb) 954
955
956 Strain fitness (log2 ratio) -2
-1
0
1
2 at 953.258 kb on - strand, within Dsui_0924 at 953.258 kb on - strand, within Dsui_0924 at 953.343 kb on - strand at 953.378 kb on + strand, within Dsui_0924 at 953.422 kb on + strand, within Dsui_0924 at 953.430 kb on + strand, within Dsui_0924 at 953.432 kb on - strand at 953.448 kb on + strand, within Dsui_0924 at 953.489 kb on + strand, within Dsui_0924 at 953.500 kb on + strand, within Dsui_0924 at 953.512 kb on - strand at 953.578 kb on - strand, within Dsui_0924 at 953.580 kb on + strand, within Dsui_0924 at 953.620 kb on + strand at 953.753 kb on + strand at 953.753 kb on + strand at 953.761 kb on - strand at 953.761 kb on - strand at 953.862 kb on - strand, within Dsui_0925 at 953.970 kb on + strand at 954.080 kb on + strand at 954.137 kb on + strand at 954.139 kb on + strand at 954.145 kb on - strand at 954.288 kb on + strand, within Dsui_0926 at 954.392 kb on + strand, within Dsui_0926 at 954.412 kb on + strand, within Dsui_0926 at 954.448 kb on - strand, within Dsui_0926 at 954.659 kb on - strand at 954.814 kb on + strand, within Dsui_0926 at 954.834 kb on + strand, within Dsui_0926 at 954.992 kb on - strand, within Dsui_0926 at 955.015 kb on - strand, within Dsui_0926 at 955.028 kb on + strand, within Dsui_0926 at 955.045 kb on + strand, within Dsui_0926 at 955.053 kb on - strand, within Dsui_0926 at 955.211 kb on + strand, within Dsui_0926 at 955.216 kb on - strand, within Dsui_0926 at 955.275 kb on + strand, within Dsui_0926 at 955.323 kb on + strand at 955.385 kb on - strand at 955.410 kb on + strand at 955.416 kb on + strand at 955.418 kb on - strand at 955.575 kb on - strand, within Dsui_0927 at 955.576 kb on - strand, within Dsui_0927 at 955.677 kb on + strand, within Dsui_0927 at 955.685 kb on - strand, within Dsui_0927 at 955.799 kb on + strand at 955.812 kb on - strand at 955.822 kb on - strand at 955.921 kb on + strand at 955.975 kb on + strand at 955.988 kb on - strand at 956.006 kb on + strand at 956.006 kb on + strand at 956.014 kb on + strand at 956.105 kb on + strand at 956.202 kb on - strand, within Dsui_0928 at 956.217 kb on + strand, within Dsui_0928 at 956.274 kb on - strand, within Dsui_0928 at 956.295 kb on - strand, within Dsui_0928 at 956.301 kb on + strand, within Dsui_0928 at 956.346 kb on + strand, within Dsui_0928 at 956.376 kb on + strand, within Dsui_0928 at 956.388 kb on - strand, within Dsui_0928 at 956.403 kb on - strand, within Dsui_0928
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 953,258 - Dsui_0924 0.67 -0.6 953,258 - Dsui_0924 0.67 -0.4 953,343 - -0.2 953,378 + Dsui_0924 0.75 +0.2 953,422 + Dsui_0924 0.78 -0.3 953,430 + Dsui_0924 0.79 -1.4 953,432 - -0.9 953,448 + Dsui_0924 0.80 -0.9 953,489 + Dsui_0924 0.83 -1.8 953,500 + Dsui_0924 0.83 +0.1 953,512 - +2.1 953,578 - Dsui_0924 0.89 -0.9 953,580 + Dsui_0924 0.89 -0.2 953,620 + +1.4 953,753 + -0.4 953,753 + -1.1 953,761 - -0.6 953,761 - -2.1 953,862 - Dsui_0925 0.48 -0.5 953,970 + -1.8 954,080 + -0.5 954,137 + +0.3 954,139 + -0.8 954,145 - -0.5 954,288 + Dsui_0926 0.17 -0.7 954,392 + Dsui_0926 0.24 -1.0 954,412 + Dsui_0926 0.26 -1.0 954,448 - Dsui_0926 0.28 -2.3 954,659 - -0.5 954,814 + Dsui_0926 0.55 -0.9 954,834 + Dsui_0926 0.56 -0.4 954,992 - Dsui_0926 0.67 +0.2 955,015 - Dsui_0926 0.69 +0.2 955,028 + Dsui_0926 0.70 -0.9 955,045 + Dsui_0926 0.71 -0.1 955,053 - Dsui_0926 0.72 -1.2 955,211 + Dsui_0926 0.83 -1.0 955,216 - Dsui_0926 0.83 -0.4 955,275 + Dsui_0926 0.88 +0.0 955,323 + +0.1 955,385 - -0.7 955,410 + -1.6 955,416 + +0.4 955,418 - -0.1 955,575 - Dsui_0927 0.32 -0.4 955,576 - Dsui_0927 0.33 +0.2 955,677 + Dsui_0927 0.59 -1.1 955,685 - Dsui_0927 0.61 -0.2 955,799 + +0.3 955,812 - -1.3 955,822 - +0.5 955,921 + -0.7 955,975 + +0.6 955,988 - +0.1 956,006 + -1.5 956,006 + -0.2 956,014 + -0.2 956,105 + +0.2 956,202 - Dsui_0928 0.13 +0.1 956,217 + Dsui_0928 0.14 -1.1 956,274 - Dsui_0928 0.18 +0.2 956,295 - Dsui_0928 0.20 -0.1 956,301 + Dsui_0928 0.20 -0.4 956,346 + Dsui_0928 0.23 +0.2 956,376 + Dsui_0928 0.25 -0.3 956,388 - Dsui_0928 0.26 -0.6 956,403 - Dsui_0928 0.27 -1.1
Or see this region's nucleotide sequence