Strain Fitness in Dechlorosoma suillum PS around Dsui_0810

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0809 and Dsui_0810 are separated by 23 nucleotidesDsui_0810 and Dsui_0811 overlap by 4 nucleotidesDsui_0811 and Dsui_0812 overlap by 41 nucleotides Dsui_0809: Dsui_0809 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 819,386 to 820,642 _0809 Dsui_0810: Dsui_0810 - signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation, at 820,666 to 822,786 _0810 Dsui_0811: Dsui_0811 - hypothetical protein, at 822,783 to 823,391 _0811 Dsui_0812: Dsui_0812 - ribosomal RNA small subunit methyltransferase RsmB, at 823,351 to 824,688 _0812 Position (kb) 820 821 822 823Strain fitness (log2 ratio) -2 -1 0 1at 820.675 kb on + strandat 821.337 kb on + strand, within Dsui_0810at 821.598 kb on + strand, within Dsui_0810at 821.663 kb on + strand, within Dsui_0810at 821.663 kb on + strand, within Dsui_0810at 821.690 kb on + strand, within Dsui_0810at 821.722 kb on + strand, within Dsui_0810at 821.722 kb on + strand, within Dsui_0810at 821.782 kb on + strand, within Dsui_0810at 821.806 kb on + strand, within Dsui_0810at 821.847 kb on + strand, within Dsui_0810at 821.963 kb on + strand, within Dsui_0810at 822.000 kb on + strand, within Dsui_0810at 822.137 kb on - strand, within Dsui_0810at 822.159 kb on + strand, within Dsui_0810at 822.167 kb on - strand, within Dsui_0810at 822.182 kb on + strand, within Dsui_0810at 822.260 kb on + strand, within Dsui_0810at 822.368 kb on - strand, within Dsui_0810at 822.408 kb on + strand, within Dsui_0810at 822.686 kb on + strandat 822.686 kb on + strandat 822.694 kb on - strandat 822.759 kb on - strandat 822.795 kb on + strandat 822.806 kb on + strandat 822.870 kb on + strand, within Dsui_0811at 822.892 kb on + strand, within Dsui_0811at 822.892 kb on + strand, within Dsui_0811at 822.902 kb on + strand, within Dsui_0811at 822.911 kb on + strand, within Dsui_0811at 822.952 kb on + strand, within Dsui_0811at 822.952 kb on + strand, within Dsui_0811at 822.970 kb on - strand, within Dsui_0811at 822.980 kb on - strand, within Dsui_0811at 823.027 kb on - strand, within Dsui_0811at 823.054 kb on + strand, within Dsui_0811at 823.065 kb on + strand, within Dsui_0811at 823.189 kb on + strand, within Dsui_0811at 823.255 kb on - strand, within Dsui_0811at 823.256 kb on - strand, within Dsui_0811at 823.282 kb on - strand, within Dsui_0811at 823.282 kb on - strand, within Dsui_0811at 823.297 kb on - strand, within Dsui_0811at 823.356 kb on - strandat 823.379 kb on - strandat 823.379 kb on - strandat 823.379 kb on - strandat 823.392 kb on - strandat 823.400 kb on - strandat 823.403 kb on + strandat 823.467 kb on + strandat 823.479 kb on + strandat 823.479 kb on + strandat 823.487 kb on - strand, within Dsui_0812at 823.522 kb on + strand, within Dsui_0812at 823.525 kb on - strand, within Dsui_0812at 823.539 kb on + strand, within Dsui_0812at 823.578 kb on - strand, within Dsui_0812at 823.685 kb on - strand, within Dsui_0812at 823.706 kb on - strand, within Dsui_0812at 823.708 kb on - strand, within Dsui_0812at 823.723 kb on + strand, within Dsui_0812at 823.752 kb on + strand, within Dsui_0812at 823.752 kb on + strand, within Dsui_0812

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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820,675 + +0.9
821,337 + Dsui_0810 0.32 -0.8
821,598 + Dsui_0810 0.44 -2.6
821,663 + Dsui_0810 0.47 -0.8
821,663 + Dsui_0810 0.47 -0.7
821,690 + Dsui_0810 0.48 -1.2
821,722 + Dsui_0810 0.50 -1.2
821,722 + Dsui_0810 0.50 -0.9
821,782 + Dsui_0810 0.53 -1.1
821,806 + Dsui_0810 0.54 -2.5
821,847 + Dsui_0810 0.56 +0.3
821,963 + Dsui_0810 0.61 -1.7
822,000 + Dsui_0810 0.63 -1.4
822,137 - Dsui_0810 0.69 -0.8
822,159 + Dsui_0810 0.70 -0.7
822,167 - Dsui_0810 0.71 -0.1
822,182 + Dsui_0810 0.71 -0.0
822,260 + Dsui_0810 0.75 -1.1
822,368 - Dsui_0810 0.80 -0.8
822,408 + Dsui_0810 0.82 -0.2
822,686 + -1.7
822,686 + -1.4
822,694 - -0.9
822,759 - +1.2
822,795 + +0.2
822,806 + -0.5
822,870 + Dsui_0811 0.14 -0.7
822,892 + Dsui_0811 0.18 -1.2
822,892 + Dsui_0811 0.18 -0.8
822,902 + Dsui_0811 0.20 +0.3
822,911 + Dsui_0811 0.21 -0.2
822,952 + Dsui_0811 0.28 -0.9
822,952 + Dsui_0811 0.28 -0.1
822,970 - Dsui_0811 0.31 +0.1
822,980 - Dsui_0811 0.32 -0.8
823,027 - Dsui_0811 0.40 -0.2
823,054 + Dsui_0811 0.44 -0.7
823,065 + Dsui_0811 0.46 -0.7
823,189 + Dsui_0811 0.67 -1.5
823,255 - Dsui_0811 0.78 -1.9
823,256 - Dsui_0811 0.78 -0.4
823,282 - Dsui_0811 0.82 +1.2
823,282 - Dsui_0811 0.82 +0.6
823,297 - Dsui_0811 0.84 -0.4
823,356 - -0.6
823,379 - +0.0
823,379 - -0.8
823,379 - +0.2
823,392 - -1.8
823,400 - -0.3
823,403 + -1.5
823,467 + -0.5
823,479 + +0.2
823,479 + -1.2
823,487 - Dsui_0812 0.10 -0.8
823,522 + Dsui_0812 0.13 -0.9
823,525 - Dsui_0812 0.13 +0.0
823,539 + Dsui_0812 0.14 +0.6
823,578 - Dsui_0812 0.17 -0.0
823,685 - Dsui_0812 0.25 -0.1
823,706 - Dsui_0812 0.27 -0.5
823,708 - Dsui_0812 0.27 -0.5
823,723 + Dsui_0812 0.28 -0.7
823,752 + Dsui_0812 0.30 -1.2
823,752 + Dsui_0812 0.30 -1.4

Or see this region's nucleotide sequence