Strain Fitness in Dechlorosoma suillum PS around Dsui_0728

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0727 and Dsui_0728 are separated by 101 nucleotidesDsui_0728 and Dsui_0729 are separated by 142 nucleotides Dsui_0727: Dsui_0727 - putative integral membrane protein, at 721,086 to 722,141 _0727 Dsui_0728: Dsui_0728 - threonine ammonia-lyase, biosynthetic, long form, at 722,243 to 723,754 _0728 Dsui_0729: Dsui_0729 - putative autotransporter protein,putative Ig domain-containing protein, at 723,897 to 728,669 _0729 Position (kb) 722 723 724Strain fitness (log2 ratio) -2 -1 0 1at 721.244 kb on + strand, within Dsui_0727at 721.330 kb on + strand, within Dsui_0727at 721.358 kb on + strandat 721.397 kb on - strand, within Dsui_0727at 721.541 kb on + strand, within Dsui_0727at 721.807 kb on + strand, within Dsui_0727at 721.917 kb on + strand, within Dsui_0727at 721.926 kb on - strand, within Dsui_0727at 721.966 kb on - strand, within Dsui_0727at 721.977 kb on + strand, within Dsui_0727at 722.016 kb on - strandat 722.016 kb on - strand, within Dsui_0727at 722.061 kb on + strandat 722.074 kb on - strandat 722.208 kb on - strandat 722.208 kb on - strandat 722.208 kb on - strandat 722.563 kb on + strandat 723.804 kb on - strandat 723.883 kb on - strandat 723.920 kb on + strandat 723.920 kb on + strandat 723.926 kb on + strandat 723.926 kb on + strandat 723.926 kb on + strandat 723.926 kb on + strandat 723.964 kb on + strandat 723.974 kb on + strandat 723.990 kb on - strandat 724.045 kb on - strandat 724.092 kb on + strandat 724.164 kb on + strandat 724.242 kb on - strandat 724.497 kb on - strand, within Dsui_0729at 724.580 kb on - strand, within Dsui_0729at 724.632 kb on - strand, within Dsui_0729at 724.661 kb on - strand, within Dsui_0729at 724.709 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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721,244 + Dsui_0727 0.15 -0.8
721,330 + Dsui_0727 0.23 -1.3
721,358 + +0.5
721,397 - Dsui_0727 0.29 -1.0
721,541 + Dsui_0727 0.43 -1.3
721,807 + Dsui_0727 0.68 -0.2
721,917 + Dsui_0727 0.79 -1.3
721,926 - Dsui_0727 0.80 -0.9
721,966 - Dsui_0727 0.83 -0.1
721,977 + Dsui_0727 0.84 -0.2
722,016 - -0.2
722,016 - Dsui_0727 0.88 +0.1
722,061 + +0.5
722,074 - -1.0
722,208 - -1.0
722,208 - -0.7
722,208 - -0.2
722,563 + -0.5
723,804 - -0.5
723,883 - +0.8
723,920 + -0.4
723,920 + -0.1
723,926 + -0.2
723,926 + -1.8
723,926 + -0.3
723,926 + -0.9
723,964 + -1.3
723,974 + -0.3
723,990 - -0.6
724,045 - +0.1
724,092 + +0.7
724,164 + -0.7
724,242 - -0.4
724,497 - Dsui_0729 0.13 -0.0
724,580 - Dsui_0729 0.14 -0.7
724,632 - Dsui_0729 0.15 +1.0
724,661 - Dsui_0729 0.16 +0.1
724,709 - -0.9

Or see this region's nucleotide sequence