Strain Fitness in Dechlorosoma suillum PS around Dsui_0724

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0723 and Dsui_0724 are separated by 226 nucleotidesDsui_0724 and Dsui_0725 are separated by 99 nucleotidesDsui_0725 and Dsui_0726 are separated by 2 nucleotides Dsui_0723: Dsui_0723 - chemotaxis signal transduction protein, at 716,194 to 718,851 _0723 Dsui_0724: Dsui_0724 - ABC-type multidrug transport system, ATPase component, at 719,078 to 720,001 _0724 Dsui_0725: Dsui_0725 - putative hydrolase of the alpha/beta superfamily, at 720,101 to 720,739 _0725 Dsui_0726: Dsui_0726 - ferredoxin, at 720,742 to 721,050 _0726 Position (kb) 719 720 721Strain fitness (log2 ratio) -2 -1 0 1 2 3at 718.176 kb on + strand, within Dsui_0723at 718.185 kb on - strand, within Dsui_0723at 718.390 kb on + strand, within Dsui_0723at 718.390 kb on + strand, within Dsui_0723at 718.398 kb on - strand, within Dsui_0723at 718.419 kb on + strand, within Dsui_0723at 718.437 kb on - strand, within Dsui_0723at 718.460 kb on - strand, within Dsui_0723at 718.578 kb on - strandat 718.589 kb on - strandat 718.663 kb on + strandat 718.666 kb on - strandat 718.691 kb on - strandat 718.866 kb on - strandat 718.866 kb on - strandat 718.913 kb on - strandat 718.973 kb on - strandat 719.001 kb on + strandat 719.035 kb on + strandat 719.083 kb on + strandat 719.166 kb on - strandat 719.326 kb on + strand, within Dsui_0724at 719.422 kb on + strandat 719.430 kb on + strand, within Dsui_0724at 719.430 kb on - strand, within Dsui_0724at 719.430 kb on - strand, within Dsui_0724at 719.499 kb on + strand, within Dsui_0724at 719.499 kb on + strand, within Dsui_0724at 719.596 kb on - strand, within Dsui_0724at 719.692 kb on - strand, within Dsui_0724at 719.851 kb on + strandat 719.980 kb on - strandat 719.999 kb on - strandat 720.138 kb on - strandat 720.207 kb on + strand, within Dsui_0725at 720.210 kb on - strand, within Dsui_0725at 720.215 kb on - strand, within Dsui_0725at 720.215 kb on - strand, within Dsui_0725at 720.277 kb on - strand, within Dsui_0725at 720.384 kb on + strand, within Dsui_0725at 720.461 kb on + strand, within Dsui_0725at 720.531 kb on - strand, within Dsui_0725at 720.589 kb on - strand, within Dsui_0725at 720.664 kb on + strand, within Dsui_0725at 720.729 kb on - strandat 720.804 kb on + strandat 720.830 kb on - strand, within Dsui_0726at 720.832 kb on + strand, within Dsui_0726at 720.845 kb on - strand, within Dsui_0726at 720.845 kb on - strand, within Dsui_0726at 720.911 kb on - strand, within Dsui_0726at 720.958 kb on - strand, within Dsui_0726

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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718,176 + Dsui_0723 0.75 -0.4
718,185 - Dsui_0723 0.75 -0.4
718,390 + Dsui_0723 0.83 -1.0
718,390 + Dsui_0723 0.83 -0.7
718,398 - Dsui_0723 0.83 -1.4
718,419 + Dsui_0723 0.84 -1.5
718,437 - Dsui_0723 0.84 +0.1
718,460 - Dsui_0723 0.85 -0.3
718,578 - -0.2
718,589 - -0.9
718,663 + +1.1
718,666 - -1.0
718,691 - +2.1
718,866 - -0.4
718,866 - -0.2
718,913 - -0.2
718,973 - -0.1
719,001 + +0.5
719,035 + -0.1
719,083 + -0.4
719,166 - -0.3
719,326 + Dsui_0724 0.27 -0.9
719,422 + -1.0
719,430 + Dsui_0724 0.38 -1.5
719,430 - Dsui_0724 0.38 -0.3
719,430 - Dsui_0724 0.38 +0.6
719,499 + Dsui_0724 0.46 +0.7
719,499 + Dsui_0724 0.46 -1.0
719,596 - Dsui_0724 0.56 -0.9
719,692 - Dsui_0724 0.66 -0.5
719,851 + +2.9
719,980 - -0.7
719,999 - +0.1
720,138 - -1.1
720,207 + Dsui_0725 0.17 -1.7
720,210 - Dsui_0725 0.17 +0.1
720,215 - Dsui_0725 0.18 -0.7
720,215 - Dsui_0725 0.18 -1.7
720,277 - Dsui_0725 0.28 -0.7
720,384 + Dsui_0725 0.44 -0.8
720,461 + Dsui_0725 0.56 +0.3
720,531 - Dsui_0725 0.67 +3.1
720,589 - Dsui_0725 0.76 -0.6
720,664 + Dsui_0725 0.88 -0.9
720,729 - -0.8
720,804 + +1.1
720,830 - Dsui_0726 0.28 -2.1
720,832 + Dsui_0726 0.29 -1.5
720,845 - Dsui_0726 0.33 -0.1
720,845 - Dsui_0726 0.33 -1.7
720,911 - Dsui_0726 0.55 +1.7
720,958 - Dsui_0726 0.70 -1.6

Or see this region's nucleotide sequence