Strain Fitness in Dechlorosoma suillum PS around Dsui_0628

Experiment: Anaerobic growth in rich media with nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0626 and Dsui_0627 overlap by 8 nucleotidesDsui_0627 and Dsui_0628 overlap by 1 nucleotidesDsui_0628 and Dsui_0629 overlap by 4 nucleotidesDsui_0629 and Dsui_0630 are separated by 72 nucleotides Dsui_0626: Dsui_0626 - ABC-type branched-chain amino acid transport systems, ATPase component, at 619,927 to 620,643 _0626 Dsui_0627: Dsui_0627 - ABC-type branched-chain amino acid transport systems, ATPase component, at 620,636 to 621,439 _0627 Dsui_0628: Dsui_0628 - ABC-type branched-chain amino acid transport system, permease component, at 621,439 to 622,515 _0628 Dsui_0629: Dsui_0629 - branched-chain amino acid ABC-type transport system, permease component, at 622,512 to 623,435 _0629 Dsui_0630: Dsui_0630 - ABC-type branched-chain amino acid transport system, periplasmic component, at 623,508 to 624,812 _0630 Position (kb) 621 622 623Strain fitness (log2 ratio) -2 -1 0 1at 620.496 kb on - strand, within Dsui_0626at 620.502 kb on + strand, within Dsui_0626at 620.639 kb on + strandat 620.642 kb on - strandat 620.820 kb on + strandat 620.972 kb on - strand, within Dsui_0627at 620.972 kb on - strand, within Dsui_0627at 621.116 kb on - strand, within Dsui_0627at 621.229 kb on + strand, within Dsui_0627at 621.375 kb on + strandat 621.383 kb on - strandat 621.617 kb on + strand, within Dsui_0628at 621.617 kb on + strand, within Dsui_0628at 621.639 kb on - strand, within Dsui_0628at 621.689 kb on + strand, within Dsui_0628at 621.828 kb on + strand, within Dsui_0628at 621.858 kb on + strand, within Dsui_0628at 622.029 kb on + strand, within Dsui_0628at 622.166 kb on + strand, within Dsui_0628at 622.261 kb on + strandat 622.278 kb on + strand, within Dsui_0628at 622.301 kb on - strand, within Dsui_0628at 622.413 kb on + strandat 622.501 kb on - strandat 622.510 kb on + strandat 622.510 kb on + strandat 622.511 kb on - strandat 622.595 kb on + strandat 622.676 kb on - strand, within Dsui_0629at 622.857 kb on + strand, within Dsui_0629at 622.880 kb on - strand, within Dsui_0629at 622.920 kb on + strand, within Dsui_0629at 622.928 kb on - strand, within Dsui_0629at 623.013 kb on + strand, within Dsui_0629at 623.057 kb on + strand, within Dsui_0629at 623.132 kb on - strandat 623.280 kb on + strand, within Dsui_0629at 623.285 kb on + strand, within Dsui_0629at 623.344 kb on - strandat 623.372 kb on - strandat 623.396 kb on + strandat 623.396 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor
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620,496 - Dsui_0626 0.79 -0.7
620,502 + Dsui_0626 0.80 +0.0
620,639 + -1.4
620,642 - +0.5
620,820 + +0.9
620,972 - Dsui_0627 0.42 -0.4
620,972 - Dsui_0627 0.42 -1.1
621,116 - Dsui_0627 0.60 -1.3
621,229 + Dsui_0627 0.74 -1.8
621,375 + -0.2
621,383 - -0.8
621,617 + Dsui_0628 0.17 -0.6
621,617 + Dsui_0628 0.17 -1.9
621,639 - Dsui_0628 0.19 +0.3
621,689 + Dsui_0628 0.23 -0.5
621,828 + Dsui_0628 0.36 -0.1
621,858 + Dsui_0628 0.39 +0.3
622,029 + Dsui_0628 0.55 -0.0
622,166 + Dsui_0628 0.68 +0.7
622,261 + -0.4
622,278 + Dsui_0628 0.78 -0.7
622,301 - Dsui_0628 0.80 -0.6
622,413 + -1.0
622,501 - -0.6
622,510 + -0.1
622,510 + +1.0
622,511 - -0.3
622,595 + +0.7
622,676 - Dsui_0629 0.18 -0.7
622,857 + Dsui_0629 0.37 -0.2
622,880 - Dsui_0629 0.40 +0.2
622,920 + Dsui_0629 0.44 +0.1
622,928 - Dsui_0629 0.45 -0.2
623,013 + Dsui_0629 0.54 -0.3
623,057 + Dsui_0629 0.59 +0.6
623,132 - +0.6
623,280 + Dsui_0629 0.83 +0.1
623,285 + Dsui_0629 0.84 -1.2
623,344 - -0.1
623,372 - -1.1
623,396 + -1.0
623,396 + -1.4

Or see this region's nucleotide sequence