Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0625 and Dsui_0626 are separated by 2 nucleotides Dsui_0626 and Dsui_0627 overlap by 8 nucleotides Dsui_0627 and Dsui_0628 overlap by 1 nucleotides
Dsui_0625: Dsui_0625 - putative metal-sulfur cluster biosynthetic enzyme, at 619,613 to 619,924
_0625
Dsui_0626: Dsui_0626 - ABC-type branched-chain amino acid transport systems, ATPase component, at 619,927 to 620,643
_0626
Dsui_0627: Dsui_0627 - ABC-type branched-chain amino acid transport systems, ATPase component, at 620,636 to 621,439
_0627
Dsui_0628: Dsui_0628 - ABC-type branched-chain amino acid transport system, permease component, at 621,439 to 622,515
_0628
Position (kb) 620
621
622 Strain fitness (log2 ratio) -2
-1
0
1 at 619.660 kb on - strand, within Dsui_0625 at 619.693 kb on + strand, within Dsui_0625 at 619.701 kb on - strand, within Dsui_0625 at 619.752 kb on - strand, within Dsui_0625 at 619.827 kb on + strand, within Dsui_0625 at 619.835 kb on - strand, within Dsui_0625 at 619.856 kb on - strand, within Dsui_0625 at 619.891 kb on - strand, within Dsui_0625 at 619.896 kb on - strand at 619.946 kb on + strand at 619.987 kb on + strand at 620.177 kb on - strand, within Dsui_0626 at 620.177 kb on - strand, within Dsui_0626 at 620.310 kb on - strand, within Dsui_0626 at 620.336 kb on + strand, within Dsui_0626 at 620.496 kb on - strand, within Dsui_0626 at 620.502 kb on + strand, within Dsui_0626 at 620.639 kb on + strand at 620.642 kb on - strand at 620.820 kb on + strand at 620.972 kb on - strand, within Dsui_0627 at 620.972 kb on - strand, within Dsui_0627 at 621.116 kb on - strand, within Dsui_0627 at 621.229 kb on + strand, within Dsui_0627 at 621.375 kb on + strand at 621.383 kb on - strand at 621.617 kb on + strand, within Dsui_0628 at 621.617 kb on + strand, within Dsui_0628 at 621.639 kb on - strand, within Dsui_0628 at 621.689 kb on + strand, within Dsui_0628 at 621.828 kb on + strand, within Dsui_0628 at 621.858 kb on + strand, within Dsui_0628 at 622.029 kb on + strand, within Dsui_0628 at 622.166 kb on + strand, within Dsui_0628 at 622.261 kb on + strand at 622.278 kb on + strand, within Dsui_0628 at 622.301 kb on - strand, within Dsui_0628 at 622.413 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 619,660 - Dsui_0625 0.15 -1.3 619,693 + Dsui_0625 0.26 -1.2 619,701 - Dsui_0625 0.28 -1.3 619,752 - Dsui_0625 0.45 -0.5 619,827 + Dsui_0625 0.69 -1.6 619,835 - Dsui_0625 0.71 -1.4 619,856 - Dsui_0625 0.78 +0.9 619,891 - Dsui_0625 0.89 -1.2 619,896 - -0.8 619,946 + -0.7 619,987 + +0.8 620,177 - Dsui_0626 0.35 -1.2 620,177 - Dsui_0626 0.35 -0.0 620,310 - Dsui_0626 0.53 -0.1 620,336 + Dsui_0626 0.57 +0.2 620,496 - Dsui_0626 0.79 -0.7 620,502 + Dsui_0626 0.80 +0.0 620,639 + -1.4 620,642 - +0.5 620,820 + +0.9 620,972 - Dsui_0627 0.42 -0.4 620,972 - Dsui_0627 0.42 -1.1 621,116 - Dsui_0627 0.60 -1.3 621,229 + Dsui_0627 0.74 -1.8 621,375 + -0.2 621,383 - -0.8 621,617 + Dsui_0628 0.17 -0.6 621,617 + Dsui_0628 0.17 -1.9 621,639 - Dsui_0628 0.19 +0.3 621,689 + Dsui_0628 0.23 -0.5 621,828 + Dsui_0628 0.36 -0.1 621,858 + Dsui_0628 0.39 +0.3 622,029 + Dsui_0628 0.55 -0.0 622,166 + Dsui_0628 0.68 +0.7 622,261 + -0.4 622,278 + Dsui_0628 0.78 -0.7 622,301 - Dsui_0628 0.80 -0.6 622,413 + -1.0
Or see this region's nucleotide sequence