Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0621 and Dsui_0622 are separated by 185 nucleotides Dsui_0622 and Dsui_0623 are separated by 1 nucleotides Dsui_0623 and Dsui_0624 are separated by 12 nucleotides
Dsui_0621: Dsui_0621 - RNA polymerase sigma factor, sigma-70 family, at 616,713 to 617,210
_0621
Dsui_0622: Dsui_0622 - NosL, at 617,396 to 618,001
_0622
Dsui_0623: Dsui_0623 - putative lipoprotein involved in nitrous oxide reduction, at 618,003 to 618,488
_0623
Dsui_0624: Dsui_0624 - hypothetical protein, at 618,501 to 619,610
_0624
Position (kb) 618
619 Strain fitness (log2 ratio) -2
-1
0
1
2 at 617.055 kb on + strand, within Dsui_0621 at 617.108 kb on + strand, within Dsui_0621 at 617.149 kb on - strand, within Dsui_0621 at 617.177 kb on + strand at 617.185 kb on - strand at 617.187 kb on + strand at 617.430 kb on - strand at 617.518 kb on + strand, within Dsui_0622 at 617.550 kb on - strand, within Dsui_0622 at 617.621 kb on + strand, within Dsui_0622 at 617.634 kb on - strand, within Dsui_0622 at 617.639 kb on - strand, within Dsui_0622 at 617.687 kb on - strand, within Dsui_0622 at 617.713 kb on + strand, within Dsui_0622 at 617.814 kb on - strand, within Dsui_0622 at 617.819 kb on - strand, within Dsui_0622 at 617.906 kb on - strand, within Dsui_0622 at 617.950 kb on - strand at 618.035 kb on + strand at 618.137 kb on - strand, within Dsui_0623 at 618.261 kb on - strand, within Dsui_0623 at 618.271 kb on - strand, within Dsui_0623 at 618.276 kb on - strand, within Dsui_0623 at 618.304 kb on + strand, within Dsui_0623 at 618.337 kb on + strand, within Dsui_0623 at 618.507 kb on - strand at 618.667 kb on - strand, within Dsui_0624 at 618.995 kb on + strand at 619.000 kb on + strand at 619.110 kb on + strand, within Dsui_0624
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 617,055 + Dsui_0621 0.69 +0.6 617,108 + Dsui_0621 0.79 -1.5 617,149 - Dsui_0621 0.88 +0.3 617,177 + +0.7 617,185 - -0.6 617,187 + +0.5 617,430 - +0.9 617,518 + Dsui_0622 0.20 -1.2 617,550 - Dsui_0622 0.25 -0.9 617,621 + Dsui_0622 0.37 -0.4 617,634 - Dsui_0622 0.39 -1.0 617,639 - Dsui_0622 0.40 -2.1 617,687 - Dsui_0622 0.48 -0.7 617,713 + Dsui_0622 0.52 -0.7 617,814 - Dsui_0622 0.69 -0.5 617,819 - Dsui_0622 0.70 +0.0 617,906 - Dsui_0622 0.84 -0.6 617,950 - +0.6 618,035 + -0.3 618,137 - Dsui_0623 0.28 -2.0 618,261 - Dsui_0623 0.53 +1.2 618,271 - Dsui_0623 0.55 -2.4 618,276 - Dsui_0623 0.56 -0.6 618,304 + Dsui_0623 0.62 -0.4 618,337 + Dsui_0623 0.69 -0.6 618,507 - -1.2 618,667 - Dsui_0624 0.15 -1.4 618,995 + +2.2 619,000 + +0.0 619,110 + Dsui_0624 0.55 -0.0
Or see this region's nucleotide sequence