Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0606 and Dsui_0607 are separated by 11 nucleotides Dsui_0607 and Dsui_0608 overlap by 7 nucleotides Dsui_0608 and Dsui_0609 are separated by 50 nucleotides
Dsui_0606: Dsui_0606 - putative N6-adenine-specific DNA methylase, at 601,259 to 602,431
_0606
Dsui_0607: Dsui_0607 - putative membrane protein, at 602,443 to 602,859
_0607
Dsui_0608: Dsui_0608 - nucleoside-diphosphate-sugar epimerase, at 602,853 to 603,758
_0608
Dsui_0609: Dsui_0609 - 2-polyprenylphenol hydroxylase-like oxidoreductase, at 603,809 to 604,822
_0609
Position (kb) 602
603
604 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 601.882 kb on + strand at 601.986 kb on + strand, within Dsui_0606 at 602.163 kb on - strand, within Dsui_0606 at 602.264 kb on - strand, within Dsui_0606 at 602.313 kb on - strand, within Dsui_0606 at 602.439 kb on + strand at 602.447 kb on - strand at 602.894 kb on + strand at 602.905 kb on + strand at 603.018 kb on + strand at 603.041 kb on + strand, within Dsui_0608 at 603.207 kb on - strand, within Dsui_0608 at 603.207 kb on - strand, within Dsui_0608 at 603.288 kb on - strand, within Dsui_0608 at 603.394 kb on + strand at 603.394 kb on + strand, within Dsui_0608 at 603.417 kb on - strand, within Dsui_0608 at 603.435 kb on + strand at 603.436 kb on - strand, within Dsui_0608 at 603.454 kb on - strand, within Dsui_0608 at 603.454 kb on - strand, within Dsui_0608 at 603.481 kb on + strand, within Dsui_0608 at 603.494 kb on - strand, within Dsui_0608 at 603.560 kb on - strand, within Dsui_0608 at 603.571 kb on - strand, within Dsui_0608 at 603.710 kb on + strand at 603.715 kb on + strand at 603.841 kb on + strand at 603.891 kb on + strand at 603.896 kb on + strand at 603.896 kb on + strand at 604.048 kb on + strand, within Dsui_0609 at 604.048 kb on + strand, within Dsui_0609 at 604.056 kb on - strand, within Dsui_0609 at 604.056 kb on - strand at 604.056 kb on - strand, within Dsui_0609 at 604.066 kb on - strand, within Dsui_0609 at 604.105 kb on + strand, within Dsui_0609 at 604.113 kb on - strand, within Dsui_0609 at 604.305 kb on + strand, within Dsui_0609 at 604.383 kb on - strand, within Dsui_0609 at 604.393 kb on - strand, within Dsui_0609 at 604.403 kb on - strand, within Dsui_0609 at 604.420 kb on - strand, within Dsui_0609 at 604.433 kb on - strand, within Dsui_0609 at 604.501 kb on - strand, within Dsui_0609 at 604.515 kb on - strand, within Dsui_0609 at 604.708 kb on + strand, within Dsui_0609 at 604.735 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 601,882 + -0.4 601,986 + Dsui_0606 0.62 -0.8 602,163 - Dsui_0606 0.77 -0.7 602,264 - Dsui_0606 0.86 +0.0 602,313 - Dsui_0606 0.90 -0.5 602,439 + -0.6 602,447 - -0.0 602,894 + +0.2 602,905 + +0.2 603,018 + +0.2 603,041 + Dsui_0608 0.21 -1.2 603,207 - Dsui_0608 0.39 -2.2 603,207 - Dsui_0608 0.39 -2.6 603,288 - Dsui_0608 0.48 -0.1 603,394 + +0.2 603,394 + Dsui_0608 0.60 -0.5 603,417 - Dsui_0608 0.62 -1.5 603,435 + +2.2 603,436 - Dsui_0608 0.64 -3.5 603,454 - Dsui_0608 0.66 -1.4 603,454 - Dsui_0608 0.66 -0.9 603,481 + Dsui_0608 0.69 -0.3 603,494 - Dsui_0608 0.71 -0.9 603,560 - Dsui_0608 0.78 -0.9 603,571 - Dsui_0608 0.79 +0.6 603,710 + -2.1 603,715 + -0.5 603,841 + +0.4 603,891 + -0.9 603,896 + -0.5 603,896 + -0.6 604,048 + Dsui_0609 0.24 -0.3 604,048 + Dsui_0609 0.24 -0.2 604,056 - Dsui_0609 0.24 -0.9 604,056 - +2.2 604,056 - Dsui_0609 0.24 -1.7 604,066 - Dsui_0609 0.25 -0.2 604,105 + Dsui_0609 0.29 -0.2 604,113 - Dsui_0609 0.30 +0.3 604,305 + Dsui_0609 0.49 +1.0 604,383 - Dsui_0609 0.57 -1.8 604,393 - Dsui_0609 0.58 -1.6 604,403 - Dsui_0609 0.59 -0.9 604,420 - Dsui_0609 0.60 -0.6 604,433 - Dsui_0609 0.62 -0.3 604,501 - Dsui_0609 0.68 +0.3 604,515 - Dsui_0609 0.70 -0.3 604,708 + Dsui_0609 0.89 +0.6 604,735 + +0.3
Or see this region's nucleotide sequence