Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0586 and Dsui_0587 are separated by 98 nucleotides Dsui_0587 and Dsui_0588 are separated by 6 nucleotides Dsui_0588 and Dsui_0589 are separated by 11 nucleotides
Dsui_0586: Dsui_0586 - hypothetical protein, at 583,568 to 585,022
_0586
Dsui_0587: Dsui_0587 - hypothetical protein, at 585,121 to 585,429
_0587
Dsui_0588: Dsui_0588 - putative GTPase, G3E family, at 585,436 to 586,500
_0588
Dsui_0589: Dsui_0589 - putative GTPase, G3E family, at 586,512 to 587,507
_0589
Position (kb) 585
586
587 Strain fitness (log2 ratio) -2
-1
0
1
2 at 584.444 kb on - strand, within Dsui_0586 at 584.461 kb on + strand at 584.499 kb on - strand at 584.574 kb on + strand, within Dsui_0586 at 584.582 kb on - strand, within Dsui_0586 at 584.584 kb on + strand at 584.592 kb on - strand, within Dsui_0586 at 584.618 kb on - strand, within Dsui_0586 at 584.628 kb on - strand, within Dsui_0586 at 584.657 kb on - strand, within Dsui_0586 at 584.696 kb on + strand, within Dsui_0586 at 584.729 kb on - strand, within Dsui_0586 at 584.731 kb on + strand, within Dsui_0586 at 585.011 kb on - strand at 585.024 kb on + strand at 585.032 kb on - strand at 585.095 kb on - strand at 585.209 kb on + strand, within Dsui_0587 at 585.226 kb on + strand, within Dsui_0587 at 585.228 kb on - strand, within Dsui_0587 at 585.602 kb on - strand, within Dsui_0588 at 585.659 kb on + strand at 585.774 kb on - strand, within Dsui_0588 at 586.019 kb on - strand, within Dsui_0588 at 586.024 kb on - strand, within Dsui_0588 at 586.070 kb on - strand, within Dsui_0588 at 586.132 kb on + strand at 586.194 kb on + strand, within Dsui_0588 at 586.330 kb on + strand, within Dsui_0588 at 586.360 kb on + strand at 586.368 kb on - strand, within Dsui_0588 at 586.368 kb on - strand, within Dsui_0588 at 586.448 kb on - strand at 586.576 kb on - strand at 586.615 kb on + strand at 586.623 kb on - strand, within Dsui_0589 at 586.631 kb on + strand, within Dsui_0589 at 586.700 kb on + strand, within Dsui_0589 at 586.734 kb on - strand, within Dsui_0589 at 586.734 kb on - strand, within Dsui_0589 at 586.818 kb on + strand, within Dsui_0589 at 586.821 kb on + strand, within Dsui_0589 at 586.882 kb on - strand, within Dsui_0589 at 587.025 kb on - strand, within Dsui_0589 at 587.109 kb on - strand, within Dsui_0589 at 587.119 kb on - strand, within Dsui_0589 at 587.144 kb on - strand, within Dsui_0589 at 587.166 kb on + strand at 587.203 kb on + strand, within Dsui_0589 at 587.280 kb on - strand, within Dsui_0589 at 587.301 kb on - strand, within Dsui_0589 at 587.366 kb on - strand, within Dsui_0589 at 587.431 kb on - strand at 587.500 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 584,444 - Dsui_0586 0.60 +0.7 584,461 + +1.3 584,499 - +1.3 584,574 + Dsui_0586 0.69 -0.8 584,582 - Dsui_0586 0.70 -0.9 584,584 + +0.7 584,592 - Dsui_0586 0.70 -0.2 584,618 - Dsui_0586 0.72 -0.4 584,628 - Dsui_0586 0.73 +0.8 584,657 - Dsui_0586 0.75 -0.3 584,696 + Dsui_0586 0.78 +0.3 584,729 - Dsui_0586 0.80 +0.9 584,731 + Dsui_0586 0.80 -1.1 585,011 - +0.4 585,024 + +1.3 585,032 - -2.0 585,095 - -0.7 585,209 + Dsui_0587 0.28 +1.5 585,226 + Dsui_0587 0.34 -0.2 585,228 - Dsui_0587 0.35 +0.0 585,602 - Dsui_0588 0.16 -2.2 585,659 + -0.1 585,774 - Dsui_0588 0.32 +0.1 586,019 - Dsui_0588 0.55 +0.3 586,024 - Dsui_0588 0.55 -0.1 586,070 - Dsui_0588 0.60 -0.6 586,132 + +1.3 586,194 + Dsui_0588 0.71 -0.1 586,330 + Dsui_0588 0.84 +0.1 586,360 + -0.7 586,368 - Dsui_0588 0.88 +0.7 586,368 - Dsui_0588 0.88 +2.3 586,448 - -0.3 586,576 - +1.5 586,615 + +0.9 586,623 - Dsui_0589 0.11 +0.3 586,631 + Dsui_0589 0.12 +0.1 586,700 + Dsui_0589 0.19 +0.9 586,734 - Dsui_0589 0.22 -0.1 586,734 - Dsui_0589 0.22 +0.4 586,818 + Dsui_0589 0.31 -1.0 586,821 + Dsui_0589 0.31 -0.6 586,882 - Dsui_0589 0.37 -0.1 587,025 - Dsui_0589 0.52 -2.5 587,109 - Dsui_0589 0.60 -0.8 587,119 - Dsui_0589 0.61 -0.4 587,144 - Dsui_0589 0.63 +0.8 587,166 + +2.3 587,203 + Dsui_0589 0.69 +0.9 587,280 - Dsui_0589 0.77 -0.7 587,301 - Dsui_0589 0.79 +0.9 587,366 - Dsui_0589 0.86 +0.1 587,431 - -1.1 587,500 - +0.7
Or see this region's nucleotide sequence