Experiment: Anaerobic growth in rich media with nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0560 and Dsui_0561 are separated by 213 nucleotides Dsui_0561 and Dsui_0562 are separated by 45 nucleotides Dsui_0562 and Dsui_0563 are separated by 125 nucleotides
Dsui_0560: Dsui_0560 - molybdenum-pterin binding domain protein, at 560,861 to 561,289
_0560
Dsui_0561: Dsui_0561 - ModE molybdate transport repressor domain/molybdenum-pterin binding domain protein, at 561,503 to 562,321
_0561
Dsui_0562: Dsui_0562 - molybdenum ABC transporter, periplasmic molybdate-binding protein, at 562,367 to 563,146
_0562
Dsui_0563: Dsui_0563 - molybdate ABC transporter, permease protein, at 563,272 to 563,952
_0563
Position (kb) 561
562
563 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 560.615 kb on - strand at 560.656 kb on + strand at 560.656 kb on + strand at 560.773 kb on + strand at 560.773 kb on + strand at 560.773 kb on + strand at 560.789 kb on - strand at 560.832 kb on + strand at 560.867 kb on - strand at 560.873 kb on + strand at 560.881 kb on - strand at 560.881 kb on - strand at 560.897 kb on + strand at 560.905 kb on - strand, within Dsui_0560 at 560.926 kb on - strand, within Dsui_0560 at 560.998 kb on - strand, within Dsui_0560 at 561.042 kb on + strand, within Dsui_0560 at 561.042 kb on + strand, within Dsui_0560 at 561.050 kb on - strand, within Dsui_0560 at 561.050 kb on - strand, within Dsui_0560 at 561.102 kb on - strand, within Dsui_0560 at 561.108 kb on + strand, within Dsui_0560 at 561.108 kb on + strand, within Dsui_0560 at 561.116 kb on - strand, within Dsui_0560 at 561.119 kb on + strand, within Dsui_0560 at 561.139 kb on + strand, within Dsui_0560 at 561.147 kb on - strand, within Dsui_0560 at 561.154 kb on + strand, within Dsui_0560 at 561.164 kb on + strand, within Dsui_0560 at 561.172 kb on - strand, within Dsui_0560 at 561.195 kb on - strand, within Dsui_0560 at 561.198 kb on - strand, within Dsui_0560 at 561.218 kb on - strand, within Dsui_0560 at 561.222 kb on + strand, within Dsui_0560 at 561.222 kb on + strand, within Dsui_0560 at 561.230 kb on - strand, within Dsui_0560 at 561.230 kb on - strand, within Dsui_0560 at 561.231 kb on + strand, within Dsui_0560 at 561.238 kb on + strand, within Dsui_0560 at 561.240 kb on - strand, within Dsui_0560 at 561.240 kb on - strand, within Dsui_0560 at 561.245 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.253 kb on - strand at 561.253 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.261 kb on - strand at 561.266 kb on + strand at 561.266 kb on + strand at 561.266 kb on + strand at 561.267 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.276 kb on + strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.281 kb on + strand at 561.281 kb on + strand at 561.281 kb on + strand at 561.284 kb on - strand at 561.287 kb on - strand at 561.288 kb on + strand at 561.288 kb on + strand at 561.289 kb on - strand at 561.289 kb on - strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.298 kb on - strand at 561.298 kb on - strand at 561.300 kb on + strand at 561.300 kb on + strand at 561.308 kb on - strand at 561.323 kb on - strand at 561.362 kb on - strand at 561.362 kb on - strand at 561.382 kb on - strand at 561.382 kb on - strand at 561.438 kb on + strand at 561.496 kb on + strand at 561.496 kb on + strand at 561.497 kb on + strand at 561.497 kb on + strand at 561.497 kb on + strand at 561.497 kb on + strand at 561.497 kb on + strand at 561.497 kb on + strand at 561.498 kb on - strand at 561.504 kb on - strand at 561.504 kb on - strand at 561.505 kb on - strand at 561.505 kb on - strand at 561.505 kb on - strand at 561.505 kb on - strand at 561.507 kb on + strand at 561.507 kb on + strand at 561.507 kb on + strand at 561.517 kb on + strand at 561.529 kb on + strand at 561.529 kb on + strand at 561.529 kb on + strand at 561.534 kb on + strand at 561.537 kb on - strand at 561.542 kb on + strand at 561.561 kb on - strand at 561.597 kb on - strand, within Dsui_0561 at 561.597 kb on - strand, within Dsui_0561 at 561.627 kb on + strand, within Dsui_0561 at 561.635 kb on + strand, within Dsui_0561 at 561.635 kb on + strand, within Dsui_0561 at 561.642 kb on - strand, within Dsui_0561 at 561.810 kb on - strand, within Dsui_0561 at 561.812 kb on + strand, within Dsui_0561 at 561.840 kb on - strand, within Dsui_0561 at 561.960 kb on + strand, within Dsui_0561 at 562.031 kb on - strand, within Dsui_0561 at 562.042 kb on + strand, within Dsui_0561 at 562.056 kb on - strand, within Dsui_0561 at 562.069 kb on + strand, within Dsui_0561 at 562.078 kb on - strand, within Dsui_0561 at 562.083 kb on - strand, within Dsui_0561 at 562.091 kb on - strand, within Dsui_0561 at 562.185 kb on + strand, within Dsui_0561 at 562.185 kb on + strand, within Dsui_0561 at 562.185 kb on + strand, within Dsui_0561 at 562.185 kb on + strand, within Dsui_0561 at 562.185 kb on + strand, within Dsui_0561 at 562.187 kb on - strand, within Dsui_0561 at 562.278 kb on - strand at 562.290 kb on - strand at 562.352 kb on - strand at 562.373 kb on - strand at 562.543 kb on - strand, within Dsui_0562 at 562.561 kb on + strand, within Dsui_0562 at 562.667 kb on + strand, within Dsui_0562 at 562.699 kb on + strand, within Dsui_0562 at 562.704 kb on + strand, within Dsui_0562 at 562.712 kb on - strand, within Dsui_0562 at 562.763 kb on - strand, within Dsui_0562 at 562.779 kb on + strand, within Dsui_0562 at 562.787 kb on - strand, within Dsui_0562 at 562.880 kb on + strand, within Dsui_0562 at 562.894 kb on - strand, within Dsui_0562 at 562.923 kb on + strand, within Dsui_0562 at 562.963 kb on + strand, within Dsui_0562 at 562.971 kb on - strand, within Dsui_0562 at 562.971 kb on - strand, within Dsui_0562 at 562.971 kb on - strand, within Dsui_0562 at 562.971 kb on - strand, within Dsui_0562 at 562.971 kb on - strand, within Dsui_0562 at 562.983 kb on + strand, within Dsui_0562 at 563.010 kb on - strand, within Dsui_0562 at 563.010 kb on - strand, within Dsui_0562 at 563.048 kb on + strand, within Dsui_0562 at 563.053 kb on + strand, within Dsui_0562 at 563.067 kb on - strand, within Dsui_0562 at 563.083 kb on + strand at 563.107 kb on + strand at 563.115 kb on - strand at 563.258 kb on + strand at 563.266 kb on - strand at 563.312 kb on + strand at 563.312 kb on + strand at 563.320 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic growth in rich media with nitrate electron acceptor remove 560,615 - +0.7 560,656 + +0.2 560,656 + -0.2 560,773 + -0.5 560,773 + -1.8 560,773 + -0.1 560,789 - -0.9 560,832 + +0.1 560,867 - -0.1 560,873 + +0.5 560,881 - +0.7 560,881 - -0.3 560,897 + +0.2 560,905 - Dsui_0560 0.10 -0.4 560,926 - Dsui_0560 0.15 -0.8 560,998 - Dsui_0560 0.32 +0.1 561,042 + Dsui_0560 0.42 +0.1 561,042 + Dsui_0560 0.42 +0.5 561,050 - Dsui_0560 0.44 +0.3 561,050 - Dsui_0560 0.44 -0.3 561,102 - Dsui_0560 0.56 +0.9 561,108 + Dsui_0560 0.58 +0.7 561,108 + Dsui_0560 0.58 -0.3 561,116 - Dsui_0560 0.59 +0.3 561,119 + Dsui_0560 0.60 +0.5 561,139 + Dsui_0560 0.65 +0.1 561,147 - Dsui_0560 0.67 +0.2 561,154 + Dsui_0560 0.68 -1.1 561,164 + Dsui_0560 0.71 -0.1 561,172 - Dsui_0560 0.72 +0.4 561,195 - Dsui_0560 0.78 +0.7 561,198 - Dsui_0560 0.79 -0.2 561,218 - Dsui_0560 0.83 -0.0 561,222 + Dsui_0560 0.84 -0.1 561,222 + Dsui_0560 0.84 +0.1 561,230 - Dsui_0560 0.86 -0.4 561,230 - Dsui_0560 0.86 +0.2 561,231 + Dsui_0560 0.86 -0.2 561,238 + Dsui_0560 0.88 +0.2 561,240 - Dsui_0560 0.88 +0.6 561,240 - Dsui_0560 0.88 -0.2 561,245 + Dsui_0560 0.90 +0.2 561,246 + Dsui_0560 0.90 +1.2 561,246 + Dsui_0560 0.90 -0.8 561,246 + Dsui_0560 0.90 -1.0 561,246 + Dsui_0560 0.90 +0.3 561,246 + Dsui_0560 0.90 -1.6 561,253 - +0.2 561,253 - -0.3 561,254 - -0.2 561,254 - -0.6 561,254 - -1.3 561,254 - +0.0 561,254 - -1.6 561,254 - +0.0 561,261 - -0.2 561,266 + -0.4 561,266 + -0.6 561,266 + +0.2 561,267 + +0.2 561,268 + -1.1 561,268 + +1.5 561,268 + -1.3 561,268 + +0.0 561,268 + +0.2 561,268 + -0.3 561,268 + +0.7 561,274 - -0.3 561,274 - +0.0 561,274 - +0.6 561,274 - -1.2 561,274 - -0.1 561,274 - -0.2 561,274 - +0.4 561,274 - +0.3 561,276 + -0.0 561,276 - +0.2 561,276 - +1.2 561,276 - +0.0 561,276 - -0.4 561,276 - -1.1 561,276 - +0.2 561,276 - -0.1 561,276 - +0.1 561,276 - -0.3 561,276 - +0.3 561,276 - +1.2 561,281 + -1.3 561,281 + +0.7 561,281 + +0.9 561,284 - -0.1 561,287 - +0.2 561,288 + -1.2 561,288 + +0.2 561,289 - -1.1 561,289 - -0.2 561,290 + +1.2 561,290 + -0.1 561,290 + -0.4 561,290 + +0.2 561,290 + -0.0 561,290 + +0.5 561,298 - -0.8 561,298 - +0.1 561,300 + -0.3 561,300 + -0.5 561,308 - +0.1 561,323 - +1.1 561,362 - +0.5 561,362 - +0.4 561,382 - -0.5 561,382 - +1.2 561,438 + +0.2 561,496 + +1.0 561,496 + -0.1 561,497 + -0.2 561,497 + -0.1 561,497 + +0.7 561,497 + +0.9 561,497 + +0.1 561,497 + +0.7 561,498 - +0.2 561,504 - -0.6 561,504 - -0.6 561,505 - +0.4 561,505 - -0.1 561,505 - +0.8 561,505 - +0.7 561,507 + +0.8 561,507 + -0.6 561,507 + +1.7 561,517 + -0.4 561,529 + -0.8 561,529 + -0.4 561,529 + +0.5 561,534 + -0.5 561,537 - -1.8 561,542 + -0.2 561,561 - +0.0 561,597 - Dsui_0561 0.11 +1.1 561,597 - Dsui_0561 0.11 -0.6 561,627 + Dsui_0561 0.15 -0.3 561,635 + Dsui_0561 0.16 -0.2 561,635 + Dsui_0561 0.16 -0.6 561,642 - Dsui_0561 0.17 +0.1 561,810 - Dsui_0561 0.37 +0.5 561,812 + Dsui_0561 0.38 +0.0 561,840 - Dsui_0561 0.41 -0.8 561,960 + Dsui_0561 0.56 -1.1 562,031 - Dsui_0561 0.64 -0.2 562,042 + Dsui_0561 0.66 -0.9 562,056 - Dsui_0561 0.68 +1.2 562,069 + Dsui_0561 0.69 -0.5 562,078 - Dsui_0561 0.70 -1.2 562,083 - Dsui_0561 0.71 +0.2 562,091 - Dsui_0561 0.72 -0.2 562,185 + Dsui_0561 0.83 -0.1 562,185 + Dsui_0561 0.83 +0.3 562,185 + Dsui_0561 0.83 +0.2 562,185 + Dsui_0561 0.83 +0.7 562,185 + Dsui_0561 0.83 -0.1 562,187 - Dsui_0561 0.84 +1.1 562,278 - -0.6 562,290 - +1.2 562,352 - -0.1 562,373 - +0.4 562,543 - Dsui_0562 0.23 -1.0 562,561 + Dsui_0562 0.25 -2.7 562,667 + Dsui_0562 0.38 -1.7 562,699 + Dsui_0562 0.43 -1.9 562,704 + Dsui_0562 0.43 -1.6 562,712 - Dsui_0562 0.44 -3.0 562,763 - Dsui_0562 0.51 -0.9 562,779 + Dsui_0562 0.53 -2.3 562,787 - Dsui_0562 0.54 -1.6 562,880 + Dsui_0562 0.66 -1.5 562,894 - Dsui_0562 0.68 +0.4 562,923 + Dsui_0562 0.71 -0.1 562,963 + Dsui_0562 0.76 -2.7 562,971 - Dsui_0562 0.77 -1.8 562,971 - Dsui_0562 0.77 -0.3 562,971 - Dsui_0562 0.77 -2.2 562,971 - Dsui_0562 0.77 -1.1 562,971 - Dsui_0562 0.77 -1.0 562,983 + Dsui_0562 0.79 -0.6 563,010 - Dsui_0562 0.82 -2.5 563,010 - Dsui_0562 0.82 -1.6 563,048 + Dsui_0562 0.87 -3.7 563,053 + Dsui_0562 0.88 -1.0 563,067 - Dsui_0562 0.90 -3.2 563,083 + -0.9 563,107 + -0.1 563,115 - -1.1 563,258 + -0.3 563,266 - -1.8 563,312 + -1.1 563,312 + -1.1 563,320 - -1.4
Or see this region's nucleotide sequence