Strain Fitness in Shewanella amazonensis SB2B around Sama_3119

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
3,697,201	+		Sama_3118	0.84	+0.9
3,697,202	-		Sama_3118	0.84	-0.3
3,697,202	-		Sama_3118	0.84	-0.5
3,697,215	+		Sama_3118	0.87	+0.3
3,697,215	+		Sama_3118	0.87	+0.2
3,697,216	-		Sama_3118	0.87	+0.7
3,697,233	+				+1.1
3,697,233	+				-0.8
3,697,233	+				+0.1
3,697,233	+				-1.1
3,697,233	+				+0.2
3,697,233	+				-0.3
3,697,233	+				-0.3
3,697,233	+				-0.0
3,697,233	+				+1.0
3,697,233	+				-0.3
3,697,233	+				-1.1
3,697,233	+				-1.7
3,697,233	+				+0.1
3,697,234	-				-0.0
3,697,234	-				-0.3
3,697,234	-				+0.3
3,697,234	-				+1.3
3,697,234	-				+0.5
3,697,234	-				-0.3
3,697,236	+				+1.3
3,697,236	+				-2.3
3,697,236	+				+0.5
3,697,236	+				+1.9
3,697,236	+				-0.5
3,697,236	+				-1.3
3,697,237	-				+0.8
3,697,237	-				-0.0
3,697,237	-				-0.9
3,697,237	-				+0.8
3,697,237	-				-0.3
3,697,237	-				+0.3
3,697,237	-				-0.2
3,697,237	-				+0.8
3,697,247	+				-0.2
3,697,248	-				-0.3
3,697,287	+				-0.3
3,697,287	+				-1.3
3,697,287	+				-0.2
3,697,287	+				+1.6
3,697,287	+				-1.6
3,697,288	-				+0.5
3,697,288	-				+1.2
3,697,289	+				-0.8
3,697,289	+				-0.0
3,697,289	+				+3.4
3,697,289	+				-2.7
3,697,289	+				-1.1
3,697,290	-				-0.9
3,697,290	-				+0.7
3,697,290	-				-1.2
3,697,290	-				-0.1
3,697,304	+				-0.8
3,697,305	-				-0.7
3,697,306	+				-0.4
3,697,306	+				+0.5
3,697,317	+				-0.9
3,697,317	+				+0.2
3,697,362	+				+0.7
3,697,362	+				+0.2
3,697,362	+				+0.6
3,697,362	+				+0.6
3,697,363	-				+0.9
3,697,363	-				-0.2
3,697,363	-				-1.5
3,697,363	-				+0.9
3,697,378	+				-1.6
3,697,378	+				+1.3
3,697,379	-				-0.2
3,697,379	-				+0.3
3,697,454	+				+0.1
3,697,455	-				-1.1
3,697,464	-				-0.6
3,697,464	-				-0.7
3,697,464	-				-1.6
3,697,464	-				-2.2
3,697,464	-				+0.7
3,697,464	-				-0.9
3,697,531	+				-0.4
3,697,543	+				-0.2
3,697,544	-				+0.4
3,697,552	-				+1.1
3,697,552	-				+1.4
3,697,563	+				+1.4
3,697,579	+				+0.4
3,697,579	+				-0.6
3,697,579	+				+0.5
3,697,579	+				+0.3
3,697,580	-				+0.6
3,697,580	-				-0.1
3,697,580	-				+0.5
3,697,582	+				-0.6
3,697,583	-				-0.9
3,697,614	-				-0.7
3,697,632	-				-0.5
3,697,649	-				-1.2
3,697,696	+				+0.2
3,697,697	-				-0.0
3,697,731	-				-0.2
3,697,746	+				+1.4
3,697,761	+				+1.5
3,697,787	+				-1.2
3,697,850	-				-0.1
3,697,887	+				+1.7
3,697,949	-				-0.1
3,698,000	-				-1.2
3,698,000	-				+0.4
3,698,123	+				-0.0
3,698,123	+				-1.9
3,698,123	+				+0.1
3,698,124	-				-1.0
3,698,124	-				-0.7
3,698,163	-				-0.4
3,698,176	-				+0.9
3,698,182	+				-0.7
3,698,183	-				+1.7
3,698,183	-				-0.5
3,698,254	+		Sama_3119	0.10	+0.5
3,698,254	+		Sama_3119	0.10	-0.6
3,698,254	+		Sama_3119	0.10	+1.3
3,698,254	+		Sama_3119	0.10	-0.9
3,698,255	-		Sama_3119	0.10	-1.9
3,698,308	+		Sama_3119	0.16	-0.4
3,698,323	+		Sama_3119	0.18	+0.4
3,698,324	-		Sama_3119	0.18	+0.7
3,698,324	-		Sama_3119	0.18	-1.0
3,698,410	-		Sama_3119	0.28	-0.9
3,698,410	-		Sama_3119	0.28	-0.3
3,698,463	+		Sama_3119	0.34	-0.9
3,698,463	+		Sama_3119	0.34	+0.1
3,698,463	+		Sama_3119	0.34	-0.6
3,698,463	+		Sama_3119	0.34	-1.9
3,698,463	+		Sama_3119	0.34	+0.2
3,698,463	+		Sama_3119	0.34	+1.0
3,698,463	+		Sama_3119	0.34	+1.3
3,698,463	+		Sama_3119	0.34	-0.0
3,698,463	+		Sama_3119	0.34	+0.1
3,698,463	+		Sama_3119	0.34	+0.1
3,698,463	+		Sama_3119	0.34	+1.2
3,698,463	+		Sama_3119	0.34	-1.2
3,698,463	+		Sama_3119	0.34	+1.7
3,698,464	-		Sama_3119	0.34	+1.0
3,698,464	-		Sama_3119	0.34	+1.4
3,698,464	-		Sama_3119	0.34	+0.0
3,698,464	-		Sama_3119	0.34	-0.9
3,698,464	-		Sama_3119	0.34	-0.6
3,698,464	-		Sama_3119	0.34	-0.1
3,698,497	+		Sama_3119	0.37	+0.6
3,698,498	-		Sama_3119	0.38	-1.1
3,698,498	-		Sama_3119	0.38	+0.4
3,698,552	+		Sama_3119	0.44	+0.9
3,698,553	-		Sama_3119	0.44	-0.5
3,698,673	+		Sama_3119	0.57	+1.9
3,698,685	+		Sama_3119	0.59	-0.1
3,698,686	-		Sama_3119	0.59	-0.3
3,698,704	-		Sama_3119	0.61	-0.7
3,698,736	-		Sama_3119	0.64	+0.0
3,698,736	-		Sama_3119	0.64	-0.0
3,698,737	+		Sama_3119	0.64	-0.9
3,698,737	+		Sama_3119	0.64	-0.2
3,698,737	+		Sama_3119	0.64	+1.0
3,698,737	+		Sama_3119	0.64	+0.3
3,698,737	+		Sama_3119	0.64	-2.2
3,698,737	+		Sama_3119	0.64	+1.1
3,698,737	+		Sama_3119	0.64	+0.5
3,698,737	+		Sama_3119	0.64	+1.1
3,698,737	+		Sama_3119	0.64	+1.8
3,698,738	-		Sama_3119	0.65	-0.8
3,698,738	-		Sama_3119	0.65	-0.9
3,698,738	-		Sama_3119	0.65	-2.1
3,698,738	-		Sama_3119	0.65	+0.8
3,698,738	-		Sama_3119	0.65	+0.1
3,698,738	-		Sama_3119	0.65	+0.1
3,698,738	-		Sama_3119	0.65	-0.9
3,698,738	-		Sama_3119	0.65	+1.5
3,698,789	+		Sama_3119	0.70	-0.3
3,698,789	+		Sama_3119	0.70	-0.2
3,698,789	+		Sama_3119	0.70	+0.7
3,698,790	-		Sama_3119	0.70	-1.2
3,698,790	-		Sama_3119	0.70	+0.9
3,698,790	-		Sama_3119	0.70	+1.1
3,698,897	+		Sama_3119	0.82	-0.2
3,698,898	-		Sama_3119	0.83	+1.1
3,698,898	-		Sama_3119	0.83	-0.5
3,698,898	-		Sama_3119	0.83	-0.2
3,698,926	-		Sama_3119	0.86	-1.2
3,698,965	-				+1.0
3,698,965	-				-0.4
3,699,002	-				-0.9
3,699,050	+				-0.2
3,699,050	+				+1.0
3,699,051	-				-0.4
3,699,051	-				-0.1
3,699,051	-				+1.1
3,699,063	+				-0.7
3,699,063	+				+0.5
3,699,063	+				+0.7
3,699,063	+				-3.2
3,699,063	+				+0.3
3,699,063	+				-2.5
3,699,063	+				+0.1
3,699,063	+				-1.5
3,699,064	-				+1.4
3,699,064	-				+1.4
3,699,064	-				-0.6
3,699,064	-				+0.3
3,699,064	-				+0.2
3,699,085	+				+2.4
3,699,086	-				+1.0
3,699,086	-				-0.1
3,699,122	-				-0.9
3,699,127	+				+1.1
3,699,127	+				-0.6
3,699,128	-				-1.9
3,699,128	-				-0.3
3,699,190	+				-1.9
3,699,191	-				-0.8
3,699,191	-				+0.4
3,699,191	-				+0.9
3,699,215	+				-0.3
3,699,267	-				-0.2
3,699,276	+				-0.0
3,699,276	+				-1.4
3,699,276	+				-1.3
3,699,277	-				+0.2
3,699,277	-				+0.2
3,699,277	-				-0.7
3,699,291	+				-0.3
3,699,291	+				-0.1
3,699,292	-				+0.7
3,699,292	-				+0.3
3,699,292	-				-0.1
3,699,292	-				+0.7
3,699,327	+				-2.2
3,699,327	+				+1.0
3,699,327	+				+0.7
3,699,328	-				+1.8
3,699,328	-				+0.0
3,699,328	-				+0.2
3,699,328	-				-0.3
3,699,333	+				+0.8
3,699,348	+				+0.1
3,699,348	+				-3.4
3,699,349	-				-0.3
3,699,427	+				+0.3
3,699,501	+				-0.8
3,699,505	+				-1.1
3,699,506	-				+0.1
3,699,506	-				+0.5
3,699,506	-				+1.0
3,699,532	+				+0.3
3,699,533	-				-0.2
3,699,566	+				-3.1
3,699,566	+				-0.6
3,699,567	-				-0.0
3,699,594	+				-1.3
3,699,595	-				-0.5
3,699,679	+				+0.0
3,699,680	-				-0.5
3,699,680	-				-1.4
3,699,833	+				-0.1
3,699,834	-				+0.1
3,699,834	-				-0.2
3,699,834	-				+1.0
3,699,834	-				+0.5
3,699,981	+				+0.6
3,699,982	-				-0.4
3,699,982	-				-1.5
3,699,988	-				-1.2
3,699,998	+				+0.1
3,699,998	+				+0.4
3,699,999	-				-0.2
3,699,999	-				-0.5
3,700,011	+				-0.3
3,700,011	+				-0.1
3,700,012	-				+0.4
3,700,019	+				-0.2
3,700,019	+				-0.8
3,700,019	+				+0.3
3,700,020	-				+0.3
3,700,020	-				-0.0
3,700,020	-				-1.9
3,700,020	-				-0.5
3,700,020	-				+2.1
3,700,020	-				+0.2
3,700,020	-				-0.2
3,700,020	-				+0.5
3,700,022	-				+0.6
3,700,023	+				+0.1
3,700,023	+				-0.5
3,700,023	+				-2.2
3,700,023	+				-1.2
3,700,023	+				+2.4
3,700,024	-				-0.0
3,700,024	-				+0.1
3,700,024	-				-0.1
3,700,024	-				-0.4
3,700,024	-				+1.7
3,700,031	-				+0.3
3,700,031	-				+1.0
3,700,033	+				-0.1
3,700,034	-				+1.4
3,700,034	-				+0.4
3,700,034	-				+0.6
3,700,049	+				-1.1
3,700,049	+				-0.3
3,700,050	-				+0.6
3,700,050	-				+1.5
3,700,050	-				+0.9
3,700,050	-				-0.4
3,700,050	-				+1.1
3,700,050	-				-1.9
3,700,050	-				+0.1