Strain Fitness in Shewanella amazonensis SB2B around Sama_2643

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
3,165,460	+		Sama_2642	0.28	-3.1
3,165,471	+		Sama_2642	0.29	-2.8
3,165,524	+		Sama_2642	0.34	-1.7
3,165,525	-		Sama_2642	0.34	+0.9
3,165,525	-		Sama_2642	0.34	-2.1
3,165,582	+		Sama_2642	0.39	-1.7
3,165,582	+		Sama_2642	0.39	-0.7
3,165,582	+		Sama_2642	0.39	-1.7
3,165,582	+		Sama_2642	0.39	-1.9
3,165,582	+		Sama_2642	0.39	-1.1
3,165,582	+		Sama_2642	0.39	-1.9
3,165,582	+		Sama_2642	0.39	-1.9
3,165,583	-		Sama_2642	0.39	-3.7
3,165,583	-		Sama_2642	0.39	-1.1
3,165,600	+		Sama_2642	0.40	-2.5
3,165,601	-		Sama_2642	0.41	-1.0
3,165,609	+		Sama_2642	0.41	-3.3
3,165,609	+		Sama_2642	0.41	-1.7
3,165,609	+		Sama_2642	0.41	-1.3
3,165,610	-		Sama_2642	0.41	-0.1
3,165,610	-		Sama_2642	0.41	-4.2
3,165,610	-		Sama_2642	0.41	-3.2
3,165,610	-		Sama_2642	0.41	-2.8
3,165,630	-		Sama_2642	0.43	-2.4
3,165,630	-		Sama_2642	0.43	-1.1
3,165,670	+		Sama_2642	0.47	-2.4
3,165,687	+		Sama_2642	0.48	-3.5
3,165,687	+		Sama_2642	0.48	-1.1
3,165,687	+		Sama_2642	0.48	-4.0
3,165,688	-		Sama_2642	0.48	-3.3
3,165,688	-		Sama_2642	0.48	-3.3
3,165,688	-		Sama_2642	0.48	-2.8
3,165,824	+		Sama_2642	0.61	-1.8
3,165,824	+		Sama_2642	0.61	-3.9
3,165,825	-		Sama_2642	0.61	-0.8
3,165,867	+		Sama_2642	0.65	-1.9
3,165,868	-		Sama_2642	0.65	-2.9
3,165,868	-		Sama_2642	0.65	-2.5
3,165,868	-		Sama_2642	0.65	-2.3
3,165,971	-		Sama_2642	0.74	-3.9
3,166,089	+		Sama_2642	0.85	-2.9
3,166,089	+		Sama_2642	0.85	-1.1
3,166,089	+		Sama_2642	0.85	-2.4
3,166,090	-		Sama_2642	0.85	-3.0
3,166,090	-		Sama_2642	0.85	-0.7
3,166,090	-		Sama_2642	0.85	-4.2
3,166,090	-		Sama_2642	0.85	-2.5
3,166,090	-		Sama_2642	0.85	-3.7
3,166,090	-		Sama_2642	0.85	-1.7
3,166,090	-		Sama_2642	0.85	-1.1
3,166,090	-		Sama_2642	0.85	-3.1
3,166,090	-		Sama_2642	0.85	-1.9
3,166,094	+		Sama_2642	0.85	-2.1
3,166,145	-		Sama_2642	0.90	-3.8
3,166,145	-		Sama_2642	0.90	-1.9
3,166,146	+				-3.9
3,166,146	+				-1.9
3,166,146	+				-4.2
3,166,146	+				-2.7
3,166,146	+				-3.8
3,166,147	-				-2.9
3,166,147	-				-2.7
3,166,159	+				-1.4
3,166,159	+				-0.1
3,166,159	+				-3.5
3,166,160	-				-0.7
3,166,160	-				-2.2
3,166,161	+				-1.7
3,166,161	+				-0.7
3,166,162	-				-3.5
3,166,245	-				-1.7
3,166,245	-				-2.4
3,166,247	+				-1.4
3,166,247	+				-3.6
3,166,247	+				-0.7
3,166,248	-				-3.9
3,166,248	-				-1.7
3,166,258	+				-1.1
3,166,258	+				-3.1
3,166,258	+				-0.1
3,166,258	+				-4.0
3,166,258	+				-1.4
3,166,258	+				-2.9
3,166,258	+				-2.3
3,166,258	+				-0.1
3,166,259	-				-3.7
3,166,259	-				-3.0
3,166,274	+				-3.6
3,166,275	-				-2.5
3,166,280	+				-3.8
3,166,280	+				-3.5
3,166,280	+				-3.4
3,166,281	-				-3.9
3,166,281	-				-2.8
3,166,281	-				-2.3
3,166,281	-				-2.1
3,166,281	-				-0.7
3,166,295	+				-1.9
3,166,296	-				-1.4
3,166,296	-				-2.1
3,166,328	+				+1.2
3,166,328	+				-1.1
3,166,329	-				-0.7
3,166,333	+				-0.7
3,166,334	-				-3.3
3,166,340	-				-0.7
3,166,340	-				-2.1
3,166,340	-				-3.7
3,166,351	+				-1.4
3,166,351	+				-1.9
3,166,351	+				-2.8
3,166,351	+				-3.9
3,166,352	-				-3.7
3,166,352	-				-2.9
3,166,352	-				-3.3
3,166,352	-				-2.4
3,166,352	-				-2.9
3,166,403	+				-2.5
3,166,404	-				-2.8
3,166,419	-				-1.4
3,166,419	-				-4.7
3,166,422	-				-2.4
3,166,422	-				-3.7
3,166,422	-				-2.7
3,166,434	-				-2.8
3,166,514	+				-3.6
3,166,514	+				-2.5
3,166,514	+				-3.7
3,166,536	-				-0.7
3,166,536	-				-4.2
3,166,536	-				-3.7
3,166,580	+		Sama_2643	0.11	-3.0
3,166,727	+		Sama_2643	0.22	-3.3
3,166,727	+		Sama_2643	0.22	-1.4
3,166,728	-		Sama_2643	0.22	-4.5
3,166,738	+		Sama_2643	0.22	-3.5
3,166,738	+		Sama_2643	0.22	-1.4
3,166,739	-		Sama_2643	0.22	-3.7
3,166,739	-		Sama_2643	0.22	-2.9
3,166,739	-		Sama_2643	0.22	-3.6
3,166,763	+		Sama_2643	0.24	-2.4
3,166,790	+		Sama_2643	0.26	-3.1
3,166,790	+		Sama_2643	0.26	-3.3
3,166,790	+		Sama_2643	0.26	-3.7
3,166,796	+		Sama_2643	0.27	-2.8
3,166,810	-		Sama_2643	0.28	-1.1
3,166,837	+		Sama_2643	0.30	-3.3
3,166,841	+		Sama_2643	0.30	-2.5
3,166,841	+		Sama_2643	0.30	-2.5
3,166,842	-		Sama_2643	0.30	-0.8
3,166,842	-		Sama_2643	0.30	-2.7
3,166,842	-		Sama_2643	0.30	-3.8
3,166,903	-		Sama_2643	0.34	-3.1
3,166,903	-		Sama_2643	0.34	-1.3
3,166,903	-		Sama_2643	0.34	-2.1
3,166,903	-		Sama_2643	0.34	-1.4
3,166,903	-		Sama_2643	0.34	-2.9
3,166,903	-		Sama_2643	0.34	-2.8
3,166,903	-		Sama_2643	0.34	-0.8
3,166,903	-		Sama_2643	0.34	-1.4
3,166,903	-		Sama_2643	0.34	-1.7
3,166,924	+		Sama_2643	0.36	-1.9
3,166,925	-		Sama_2643	0.36	-3.4
3,166,925	-		Sama_2643	0.36	-1.7
3,166,925	-		Sama_2643	0.36	-3.1
3,166,956	+		Sama_2643	0.38	-2.3
3,166,956	+		Sama_2643	0.38	-2.7
3,166,956	+		Sama_2643	0.38	-1.9
3,166,957	-		Sama_2643	0.38	+0.9
3,166,957	-		Sama_2643	0.38	-2.1
3,167,003	+		Sama_2643	0.42	-0.7
3,167,037	-		Sama_2643	0.44	-1.9
3,167,046	-		Sama_2643	0.45	-2.1
3,167,046	-		Sama_2643	0.45	-0.7
3,167,070	-		Sama_2643	0.46	-3.1
3,167,083	+		Sama_2643	0.47	-3.2
3,167,084	-		Sama_2643	0.47	-0.1
3,167,150	+		Sama_2643	0.52	-3.6
3,167,150	+		Sama_2643	0.52	-1.9
3,167,150	+		Sama_2643	0.52	-2.3
3,167,150	+		Sama_2643	0.52	-2.5
3,167,151	-		Sama_2643	0.52	-1.7
3,167,151	-		Sama_2643	0.52	-2.7
3,167,151	-		Sama_2643	0.52	-2.8
3,167,151	-		Sama_2643	0.52	-1.6
3,167,198	+		Sama_2643	0.56	-1.8
3,167,222	+		Sama_2643	0.57	-3.2
3,167,223	-		Sama_2643	0.57	-2.5
3,167,245	+		Sama_2643	0.59	-0.1
3,167,245	+		Sama_2643	0.59	-2.7
3,167,300	+		Sama_2643	0.63	-2.4
3,167,300	+		Sama_2643	0.63	-2.0
3,167,301	-		Sama_2643	0.63	-0.4
3,167,347	+		Sama_2643	0.66	-2.8
3,167,347	+		Sama_2643	0.66	-0.7
3,167,404	+		Sama_2643	0.71	-3.3
3,167,405	-		Sama_2643	0.71	-1.2
3,167,405	-		Sama_2643	0.71	-3.0
3,167,412	+		Sama_2643	0.71	-3.3
3,167,412	+		Sama_2643	0.71	-0.9
3,167,412	+		Sama_2643	0.71	-4.4
3,167,435	+		Sama_2643	0.73	-2.4
3,167,435	+		Sama_2643	0.73	-2.5
3,167,435	+		Sama_2643	0.73	-2.7
3,167,435	+		Sama_2643	0.73	-2.5
3,167,436	-		Sama_2643	0.73	-3.7
3,167,456	+		Sama_2643	0.74	-1.4
3,167,532	-		Sama_2643	0.80	-0.1
3,167,532	-		Sama_2643	0.80	-2.3
3,167,546	+		Sama_2643	0.81	-4.3
3,167,546	+		Sama_2643	0.81	-0.7
3,167,546	+		Sama_2643	0.81	-2.8
3,167,551	+		Sama_2643	0.81	-3.9
3,167,578	+		Sama_2643	0.83	-0.7
3,167,578	+		Sama_2643	0.83	-3.7
3,167,578	+		Sama_2643	0.83	-3.0
3,167,578	+		Sama_2643	0.83	-2.9
3,167,578	+		Sama_2643	0.83	-3.1
3,167,578	+		Sama_2643	0.83	-2.9
3,167,578	+		Sama_2643	0.83	-2.4
3,167,578	+		Sama_2643	0.83	-2.2
3,167,579	-		Sama_2643	0.83	-3.3
3,167,608	+		Sama_2643	0.85	-2.9
3,167,654	+		Sama_2643	0.89	-1.9
3,167,654	+		Sama_2643	0.89	-3.7
3,167,654	+		Sama_2643	0.89	-1.7
3,167,654	+		Sama_2643	0.89	-1.4
3,167,655	-		Sama_2643	0.89	-2.5
3,167,655	-		Sama_2643	0.89	-0.5
3,167,655	-		Sama_2643	0.89	-3.1
3,167,655	-		Sama_2643	0.89	-2.4
3,167,655	-		Sama_2643	0.89	-4.0
3,167,655	-		Sama_2643	0.89	-1.7
3,167,655	-		Sama_2643	0.89	-3.7
3,167,657	+		Sama_2643	0.89	-1.1
3,167,657	+		Sama_2643	0.89	-2.5
3,167,657	+		Sama_2643	0.89	-1.3
3,167,658	-		Sama_2643	0.89	-3.5
3,167,658	-		Sama_2643	0.89	-3.5
3,167,677	+				-2.5
3,167,677	+				-4.3
3,167,677	+				-2.3
3,167,677	+				-1.7
3,167,677	+				-0.8
3,167,677	+				-2.8
3,167,677	+				-3.8
3,167,677	+				-3.8
3,167,677	+				-3.4
3,167,677	+				-1.1
3,167,677	+				-3.7
3,167,677	+				-4.2
3,167,677	+				-3.3
3,167,677	+				-3.8
3,167,677	+				-3.1
3,167,677	+				-2.9
3,167,677	+				-3.3
3,167,677	+				-2.3
3,167,677	+				-0.5
3,167,677	+				-1.9
3,167,677	+				-0.9
3,167,677	+				-4.6
3,167,677	+				-2.7
3,167,677	+				-1.7
3,167,678	-				-2.1
3,167,678	-				-1.9
3,167,678	-				-1.7
3,167,678	-				-1.4
3,167,678	-				-1.9
3,167,678	-				-1.9
3,167,678	-				-2.1
3,167,678	-				-3.4
3,167,678	-				-2.3
3,167,678	-				-1.1
3,167,678	-				-3.2
3,167,678	-				-0.7
3,167,678	-				-2.4
3,167,678	-				-3.8
3,167,678	-				-3.9
3,167,678	-				-3.2
3,167,678	-				-3.5
3,167,678	-				-3.3
3,167,678	-				-2.2
3,167,678	-				-0.3
3,167,678	-				-2.4
3,167,678	-				-2.5
3,167,678	-				-2.7
3,167,678	-				-2.4
3,167,678	-				-3.4
3,167,678	-				-3.7
3,167,679	+				-3.3
3,167,679	+				-1.7
3,167,679	+				-2.3
3,167,679	+				-2.1
3,167,679	+				-3.3
3,167,679	+				-3.3
3,167,679	+				-3.6
3,167,679	+				-1.7
3,167,679	+				-2.5
3,167,679	+				-2.9
3,167,679	+				-4.2
3,167,680	-				-2.9
3,167,680	-				-1.7
3,167,680	-				-2.8
3,167,680	-				-3.1
3,167,680	-				-1.7
3,167,789	+				-1.9
3,167,789	+				-2.5
3,167,825	+				-1.1
3,167,826	-				-1.9
3,167,826	-				-1.4
3,167,826	-				-2.7
3,167,858	+				-1.4
3,167,859	-				-2.9
3,167,861	-				-2.4
3,167,970	-				-0.7
3,167,970	-				-3.2
3,167,970	-				-2.3
3,168,111	+		Sama_2644	0.19	-2.4
3,168,112	-		Sama_2644	0.19	-2.1
3,168,112	-		Sama_2644	0.19	-1.3
3,168,112	-		Sama_2644	0.19	-1.1
3,168,112	-		Sama_2644	0.19	-0.8
3,168,146	+		Sama_2644	0.21	+0.9
3,168,147	-		Sama_2644	0.21	-4.3
3,168,147	-		Sama_2644	0.21	-2.3
3,168,147	-		Sama_2644	0.21	-3.1
3,168,171	+		Sama_2644	0.23	-3.2
3,168,213	+		Sama_2644	0.26	-3.5
3,168,213	+		Sama_2644	0.26	-1.4
3,168,333	+		Sama_2644	0.35	-1.7
3,168,333	+		Sama_2644	0.35	-1.7
3,168,334	-		Sama_2644	0.35	-2.1
3,168,354	+		Sama_2644	0.37	-3.5
3,168,355	-		Sama_2644	0.37	-2.5
3,168,355	-		Sama_2644	0.37	-3.3
3,168,355	-		Sama_2644	0.37	-0.1
3,168,357	-		Sama_2644	0.37	-2.9
3,168,357	-		Sama_2644	0.37	-2.5
3,168,357	-		Sama_2644	0.37	-2.1
3,168,357	-		Sama_2644	0.37	-1.4
3,168,357	-		Sama_2644	0.37	-3.7
3,168,357	-		Sama_2644	0.37	-2.8
3,168,369	+		Sama_2644	0.38	-1.4
3,168,369	+		Sama_2644	0.38	-2.5
3,168,370	-		Sama_2644	0.38	-3.2
3,168,370	-		Sama_2644	0.38	-3.0
3,168,389	-		Sama_2644	0.39	-1.9
3,168,421	-		Sama_2644	0.42	-3.3
3,168,528	+		Sama_2644	0.49	-2.1
3,168,529	-		Sama_2644	0.50	-2.8
3,168,591	-		Sama_2644	0.54	-0.5
3,168,659	+		Sama_2644	0.59	-0.1
3,168,659	+		Sama_2644	0.59	-4.5
3,168,659	+		Sama_2644	0.59	-2.8
3,168,659	+		Sama_2644	0.59	-1.4
3,168,659	+		Sama_2644	0.59	-2.8
3,168,659	+		Sama_2644	0.59	-3.1
3,168,659	+		Sama_2644	0.59	-2.3
3,168,659	+		Sama_2644	0.59	-2.5
3,168,659	+		Sama_2644	0.59	-1.9
3,168,659	+		Sama_2644	0.59	-3.7
3,168,659	+		Sama_2644	0.59	-3.4
3,168,659	+		Sama_2644	0.59	-3.9
3,168,659	+		Sama_2644	0.59	-2.1
3,168,660	-		Sama_2644	0.59	-2.3
3,168,660	-		Sama_2644	0.59	-3.2
3,168,660	-		Sama_2644	0.59	-3.0
3,168,660	-		Sama_2644	0.59	-2.1
3,168,660	-		Sama_2644	0.59	-0.3
3,168,660	-		Sama_2644	0.59	-1.7
3,168,660	-		Sama_2644	0.59	-3.3
3,168,660	-		Sama_2644	0.59	-3.5
3,168,660	-		Sama_2644	0.59	-3.1
3,168,660	-		Sama_2644	0.59	-3.5
3,168,660	-		Sama_2644	0.59	-2.9
3,168,660	-		Sama_2644	0.59	-3.0
3,168,660	-		Sama_2644	0.59	-4.2
3,168,660	-		Sama_2644	0.59	-2.5
3,168,660	-		Sama_2644	0.59	-1.7
3,168,660	-		Sama_2644	0.59	-1.9
3,168,660	-		Sama_2644	0.59	-2.9
3,168,660	-		Sama_2644	0.59	-0.1
3,168,660	-		Sama_2644	0.59	-1.1
3,168,660	-		Sama_2644	0.59	-1.0
3,168,660	-		Sama_2644	0.59	-2.3
3,168,660	-		Sama_2644	0.59	-2.9
3,168,660	-		Sama_2644	0.59	-0.1
3,168,660	-		Sama_2644	0.59	-4.7
3,168,660	-		Sama_2644	0.59	-3.5
3,168,660	-		Sama_2644	0.59	-2.3
3,168,683	+		Sama_2644	0.61	-4.1
3,168,683	+		Sama_2644	0.61	-2.5
3,168,684	-		Sama_2644	0.61	-2.7