Strain Fitness in Shewanella amazonensis SB2B around Sama_1922

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
2,348,603	+		Sama_1921	0.53	-1.2
2,348,709	-		Sama_1921	0.59	-1.4
2,348,709	-		Sama_1921	0.59	-1.4
2,348,713	-		Sama_1921	0.59	-3.5
2,348,730	+		Sama_1921	0.60	-3.3
2,348,730	+		Sama_1921	0.60	-2.1
2,348,731	-		Sama_1921	0.60	-3.7
2,348,753	+		Sama_1921	0.61	-0.1
2,348,864	+		Sama_1921	0.67	-2.7
2,348,864	+		Sama_1921	0.67	-1.5
2,348,905	+		Sama_1921	0.69	-1.5
2,348,905	+		Sama_1921	0.69	-0.4
2,348,905	+		Sama_1921	0.69	-3.5
2,348,906	-		Sama_1921	0.69	-2.7
2,348,906	-		Sama_1921	0.69	-2.2
2,348,906	-		Sama_1921	0.69	-4.0
2,348,906	-		Sama_1921	0.69	-2.4
2,348,910	+		Sama_1921	0.69	-2.5
2,348,910	+		Sama_1921	0.69	-0.4
2,348,910	+		Sama_1921	0.69	-2.1
2,348,910	+		Sama_1921	0.69	-2.2
2,348,910	+		Sama_1921	0.69	-2.4
2,348,911	-		Sama_1921	0.69	-2.8
2,348,911	-		Sama_1921	0.69	+0.2
2,348,911	-		Sama_1921	0.69	+0.6
2,348,911	-		Sama_1921	0.69	-1.9
2,348,914	+		Sama_1921	0.70	-1.4
2,348,914	+		Sama_1921	0.70	-2.3
2,348,915	-		Sama_1921	0.70	-2.5
2,348,989	-		Sama_1921	0.73	-2.1
2,349,074	-		Sama_1921	0.78	-0.9
2,349,093	+		Sama_1921	0.79	-1.7
2,349,094	-		Sama_1921	0.79	-0.9
2,349,094	-		Sama_1921	0.79	-1.9
2,349,094	-		Sama_1921	0.79	-2.5
2,349,094	-		Sama_1921	0.79	+0.6
2,349,094	-		Sama_1921	0.79	-4.5
2,349,210	-		Sama_1921	0.85	-0.4
2,349,298	-		Sama_1921	0.89	-1.9
2,349,298	-		Sama_1921	0.89	-3.1
2,349,477	+				+1.9
2,349,477	+				-2.8
2,349,491	+				-0.4
2,349,491	+				+0.6
2,349,491	+				-1.8
2,349,492	-				-1.4
2,349,505	-				-1.8
2,349,505	-				-3.8
2,349,593	+				-1.7
2,349,593	+				-2.7
2,349,594	-				-3.3
2,349,594	-				-0.1
2,349,599	+				-3.5
2,349,599	+				-0.4
2,349,600	-				-2.4
2,349,626	+				-3.3
2,349,626	+				-2.7
2,349,626	+				-0.8
2,349,627	-				-2.2
2,349,627	-				-2.6
2,349,627	-				-1.4
2,349,630	+				-1.8
2,349,644	-				-3.3
2,349,813	-		Sama_1922	0.20	-1.9
2,349,817	+		Sama_1922	0.21	-1.6
2,349,818	-		Sama_1922	0.21	-3.5
2,349,983	+		Sama_1922	0.34	-2.7
2,349,997	-		Sama_1922	0.35	-0.9
2,350,017	+		Sama_1922	0.36	-3.6
2,350,018	-		Sama_1922	0.36	-3.8
2,350,050	-		Sama_1922	0.39	-0.9
2,350,050	-		Sama_1922	0.39	-3.6
2,350,050	-		Sama_1922	0.39	-1.7
2,350,118	+		Sama_1922	0.44	-2.2
2,350,180	+		Sama_1922	0.49	-1.7
2,350,190	+		Sama_1922	0.50	-1.7
2,350,190	+		Sama_1922	0.50	-0.7
2,350,238	+		Sama_1922	0.54	-3.3
2,350,238	+		Sama_1922	0.54	-1.4
2,350,238	+		Sama_1922	0.54	-0.4
2,350,239	-		Sama_1922	0.54	-1.0
2,350,239	-		Sama_1922	0.54	-1.1
2,350,260	+		Sama_1922	0.55	-2.5
2,350,260	+		Sama_1922	0.55	-2.2
2,350,261	-		Sama_1922	0.56	-2.7
2,350,261	-		Sama_1922	0.56	-3.4
2,350,372	-		Sama_1922	0.64	-0.9
2,350,372	-		Sama_1922	0.64	-1.9
2,350,383	+		Sama_1922	0.65	-3.4
2,350,384	-		Sama_1922	0.65	-2.4
2,350,406	+		Sama_1922	0.67	+0.6
2,350,407	-		Sama_1922	0.67	-2.4
2,350,425	+		Sama_1922	0.68	-3.7
2,350,425	+		Sama_1922	0.68	-2.4
2,350,425	+		Sama_1922	0.68	-1.7
2,350,425	+		Sama_1922	0.68	-3.8
2,350,425	+		Sama_1922	0.68	-3.3
2,350,425	+		Sama_1922	0.68	-3.9
2,350,425	+		Sama_1922	0.68	-2.2
2,350,425	+		Sama_1922	0.68	-1.7
2,350,425	+		Sama_1922	0.68	-1.2
2,350,425	+		Sama_1922	0.68	-3.0
2,350,426	-		Sama_1922	0.68	-1.9
2,350,426	-		Sama_1922	0.68	-2.7
2,350,426	-		Sama_1922	0.68	-2.8
2,350,426	-		Sama_1922	0.68	-2.9
2,350,426	-		Sama_1922	0.68	-1.1
2,350,426	-		Sama_1922	0.68	-1.7
2,350,426	-		Sama_1922	0.68	-0.9
2,350,426	-		Sama_1922	0.68	-1.9
2,350,427	+		Sama_1922	0.69	-3.8
2,350,427	+		Sama_1922	0.69	-3.9
2,350,427	+		Sama_1922	0.69	-2.8
2,350,428	-		Sama_1922	0.69	-1.8
2,350,428	-		Sama_1922	0.69	+1.2
2,350,428	-		Sama_1922	0.69	-1.9
2,350,429	+		Sama_1922	0.69	-2.2
2,350,429	+		Sama_1922	0.69	-1.4
2,350,429	+		Sama_1922	0.69	+1.1
2,350,429	+		Sama_1922	0.69	-2.5
2,350,429	+		Sama_1922	0.69	-3.1
2,350,429	+		Sama_1922	0.69	-1.9
2,350,429	+		Sama_1922	0.69	+0.3
2,350,429	+		Sama_1922	0.69	-1.7
2,350,429	+		Sama_1922	0.69	-2.9
2,350,429	+		Sama_1922	0.69	-2.2
2,350,430	-		Sama_1922	0.69	-3.5
2,350,430	-		Sama_1922	0.69	-2.7
2,350,430	-		Sama_1922	0.69	-2.1
2,350,517	+		Sama_1922	0.76	-0.1
2,350,517	+		Sama_1922	0.76	-0.4
2,350,517	+		Sama_1922	0.76	-1.4
2,350,572	+		Sama_1922	0.80	-0.4
2,350,572	+		Sama_1922	0.80	-2.8
2,350,572	+		Sama_1922	0.80	-1.9
2,350,572	+		Sama_1922	0.80	-2.4
2,350,572	+		Sama_1922	0.80	-0.4
2,350,573	-		Sama_1922	0.80	-1.9
2,350,573	-		Sama_1922	0.80	-1.7
2,350,573	-		Sama_1922	0.80	+0.1
2,350,599	-		Sama_1922	0.82	-0.4
2,350,619	+		Sama_1922	0.84	+0.6
2,350,620	-		Sama_1922	0.84	-0.4
2,350,633	+		Sama_1922	0.85	-0.2
2,350,634	-		Sama_1922	0.85	-1.9
2,350,675	-		Sama_1922	0.88	-0.9
2,350,678	+		Sama_1922	0.88	-2.5
2,350,679	-		Sama_1922	0.88	-2.4
2,350,679	-		Sama_1922	0.88	-3.5
2,350,720	-				-3.5
2,350,740	+				-2.2
2,350,740	+				+0.6
2,350,756	+				-2.1
2,350,781	+				-2.4
2,350,781	+				-1.7
2,350,781	+				-0.8
2,350,781	+				-3.3
2,350,781	+				-3.8
2,350,781	+				-2.2
2,350,782	-				-2.4
2,350,782	-				-0.1
2,350,782	-				-3.4
2,350,785	+				-3.4
2,350,785	+				-2.5
2,350,786	-				-1.4
2,350,786	-				-2.1
2,350,823	-				-2.4
2,350,825	-				-1.4
2,350,855	+				-0.4
2,350,992	+		Sama_1923	0.10	-4.3
2,350,992	+		Sama_1923	0.10	-1.7
2,351,015	-		Sama_1923	0.12	-1.4
2,351,019	+		Sama_1923	0.12	-3.9
2,351,020	-		Sama_1923	0.12	-3.4
2,351,048	+		Sama_1923	0.14	-1.3
2,351,188	-		Sama_1923	0.23	-1.4
2,351,218	-		Sama_1923	0.25	-0.7
2,351,358	+		Sama_1923	0.34	-2.7
2,351,358	+		Sama_1923	0.34	-0.2
2,351,359	-		Sama_1923	0.34	-2.2
2,351,359	-		Sama_1923	0.34	-1.4
2,351,359	-		Sama_1923	0.34	-0.9
2,351,359	-		Sama_1923	0.34	-3.5
2,351,393	-		Sama_1923	0.37	-0.8
2,351,622	+		Sama_1923	0.52	-1.3
2,351,683	-		Sama_1923	0.56	-0.4
2,351,683	-		Sama_1923	0.56	-0.4
2,351,703	+		Sama_1923	0.57	-3.1
2,351,703	+		Sama_1923	0.57	-1.7
2,351,704	-		Sama_1923	0.57	-0.4
2,351,704	-		Sama_1923	0.57	-1.4
2,351,704	-		Sama_1923	0.57	+0.5
2,351,732	+		Sama_1923	0.59	-2.4
2,351,782	-		Sama_1923	0.62	-2.2
2,351,782	-		Sama_1923	0.62	-3.4
2,351,796	+		Sama_1923	0.63	-1.7
2,351,797	-		Sama_1923	0.63	-2.2
2,351,797	-		Sama_1923	0.63	-2.5
2,351,807	+		Sama_1923	0.64	-2.2
2,351,814	+		Sama_1923	0.64	-1.7