Strain Fitness in Shewanella amazonensis SB2B around Sama_1749

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
2,138,048	+				-1.8
2,138,177	+		Sama_1748	0.21	+0.7
2,138,177	+		Sama_1748	0.21	-1.0
2,138,196	+		Sama_1748	0.23	-0.3
2,138,196	+		Sama_1748	0.23	+0.8
2,138,196	+		Sama_1748	0.23	-0.1
2,138,210	-		Sama_1748	0.25	+1.1
2,138,210	-		Sama_1748	0.25	+1.1
2,138,238	+		Sama_1748	0.29	-0.1
2,138,238	+		Sama_1748	0.29	+1.1
2,138,239	-		Sama_1748	0.29	-0.4
2,138,372	-		Sama_1748	0.46	-0.5
2,138,372	-		Sama_1748	0.46	-0.4
2,138,391	-		Sama_1748	0.49	+0.2
2,138,394	-		Sama_1748	0.49	-0.4
2,138,394	-		Sama_1748	0.49	-1.8
2,138,407	-		Sama_1748	0.51	+0.4
2,138,442	+		Sama_1748	0.56	+1.6
2,138,442	+		Sama_1748	0.56	+0.0
2,138,442	+		Sama_1748	0.56	-1.1
2,138,442	+		Sama_1748	0.56	+0.9
2,138,586	+		Sama_1748	0.75	+0.7
2,138,586	+		Sama_1748	0.75	-0.2
2,138,874	+				+0.7
2,138,917	+				-1.2
2,138,917	+				-0.4
2,138,917	+				-0.1
2,138,917	+				-0.2
2,138,917	+				-0.0
2,138,918	-				-0.3
2,138,930	-				-2.6
2,138,930	-				-0.9
2,139,090	+				+0.9
2,139,090	+				+1.1
2,139,128	+				-1.9
2,139,128	+				-1.4
2,139,129	-				+0.8
2,139,129	-				-0.0
2,139,191	-				-0.6
2,139,486	+		Sama_1749	0.22	+0.3
2,139,486	+		Sama_1749	0.22	-2.6
2,139,611	+		Sama_1749	0.28	-0.0
2,139,611	+		Sama_1749	0.28	+1.6
2,139,612	-		Sama_1749	0.28	+0.3
2,139,703	+		Sama_1749	0.33	+1.1
2,139,703	+		Sama_1749	0.33	-1.8
2,139,703	+		Sama_1749	0.33	+0.9
2,139,703	+		Sama_1749	0.33	+0.4
2,139,819	-		Sama_1749	0.39	-1.0
2,139,819	-		Sama_1749	0.39	+1.6
2,139,839	+		Sama_1749	0.39	-1.4
2,139,839	+		Sama_1749	0.39	-0.3
2,139,840	-		Sama_1749	0.40	-0.6
2,139,844	-		Sama_1749	0.40	+0.6
2,139,904	+		Sama_1749	0.43	-2.0
2,139,904	+		Sama_1749	0.43	+0.9
2,139,904	+		Sama_1749	0.43	+0.6
2,139,905	-		Sama_1749	0.43	-0.3
2,139,905	-		Sama_1749	0.43	+1.1
2,139,905	-		Sama_1749	0.43	+0.6
2,139,908	+		Sama_1749	0.43	-0.0
2,139,908	+		Sama_1749	0.43	-0.8
2,139,908	+		Sama_1749	0.43	+1.0
2,139,908	+		Sama_1749	0.43	-2.6
2,139,908	+		Sama_1749	0.43	-0.2
2,139,908	+		Sama_1749	0.43	+1.4
2,139,908	+		Sama_1749	0.43	+0.6
2,139,909	-		Sama_1749	0.43	+1.1
2,139,909	-		Sama_1749	0.43	+0.6
2,139,909	-		Sama_1749	0.43	+0.8
2,139,909	-		Sama_1749	0.43	+0.8
2,139,914	+		Sama_1749	0.43	+0.8
2,139,914	+		Sama_1749	0.43	+0.4
2,139,914	+		Sama_1749	0.43	+0.4
2,139,914	+		Sama_1749	0.43	-0.4
2,139,915	-		Sama_1749	0.43	+1.3
2,139,915	-		Sama_1749	0.43	+0.7
2,139,920	+		Sama_1749	0.43	+0.9
2,139,948	-		Sama_1749	0.45	-0.1
2,140,020	+		Sama_1749	0.48	-0.2
2,140,042	-		Sama_1749	0.49	-2.3
2,140,042	-		Sama_1749	0.49	+0.4
2,140,042	-		Sama_1749	0.49	+1.6
2,140,049	+		Sama_1749	0.50	+1.2
2,140,050	-		Sama_1749	0.50	-1.4
2,140,068	+		Sama_1749	0.51	-0.2
2,140,069	-		Sama_1749	0.51	+0.2
2,140,071	-		Sama_1749	0.51	+0.2
2,140,071	-		Sama_1749	0.51	-0.3
2,140,071	-		Sama_1749	0.51	+0.3
2,140,071	-		Sama_1749	0.51	-0.0
2,140,115	-		Sama_1749	0.53	+0.9
2,140,292	+		Sama_1749	0.61	-1.0
2,140,293	-		Sama_1749	0.62	+0.2
2,140,293	-		Sama_1749	0.62	-1.2
2,140,388	+		Sama_1749	0.66	+0.6
2,140,388	+		Sama_1749	0.66	+1.1
2,140,388	+		Sama_1749	0.66	-2.0
2,140,389	-		Sama_1749	0.66	+0.7
2,140,407	+		Sama_1749	0.67	+1.4
2,140,407	+		Sama_1749	0.67	-0.4
2,140,420	-		Sama_1749	0.68	-1.6
2,140,488	+		Sama_1749	0.71	-0.4
2,140,492	+		Sama_1749	0.71	-2.4
2,140,492	+		Sama_1749	0.71	-2.0
2,140,493	-		Sama_1749	0.71	-1.0
2,140,572	+		Sama_1749	0.75	+1.6
2,140,607	+		Sama_1749	0.77	-1.0
2,140,608	-		Sama_1749	0.77	-2.4
2,140,668	+		Sama_1749	0.80	-0.4
2,140,668	+		Sama_1749	0.80	+0.7
2,140,713	+		Sama_1749	0.82	+0.5
2,140,713	+		Sama_1749	0.82	+0.6
2,140,713	+		Sama_1749	0.82	+0.6
2,140,713	+		Sama_1749	0.82	-0.7
2,140,714	-		Sama_1749	0.82	-1.0
2,140,714	-		Sama_1749	0.82	+1.1
2,140,746	+		Sama_1749	0.84	+0.0
2,140,747	-		Sama_1749	0.84	+0.1
2,140,747	-		Sama_1749	0.84	+0.1
2,140,791	-		Sama_1749	0.86	-2.3
2,141,052	+				+1.6
2,141,053	-				+0.6
2,141,107	+				-1.8
2,141,107	+				+0.1
2,141,107	+				-2.3
2,141,108	-				-1.0
2,141,108	-				+0.6
2,141,108	-				-0.0
2,141,108	-				-0.9
2,141,136	+				-1.9
2,141,145	+				-0.0
2,141,165	+				-0.0
2,141,165	+				-0.8
2,141,166	-				+0.2
2,141,166	-				+1.2
2,141,206	+				+1.6
2,141,206	+				-0.4
2,141,208	+				+0.8
2,141,209	-				-1.8
2,141,209	-				-1.0
2,141,217	+				+4.0
2,141,225	+				-2.0
2,141,226	-				-0.2
2,141,229	+				-0.0
2,141,229	+				+0.6
2,141,229	+				-1.0
2,141,241	+				+1.7
2,141,242	-				-1.6
2,141,401	+		Sama_1750	0.48	-1.0
2,141,474	-		Sama_1750	0.70	-1.3
2,141,593	+				+0.6
2,141,594	-				+0.1
2,141,594	-				+1.2
2,141,594	-				-1.4
2,141,623	+				-2.1
2,141,624	-				-0.9
2,141,624	-				-1.3
2,141,625	+				-1.8
2,141,718	+				+0.0
2,141,728	+				-1.4
2,141,771	+		Sama_1751	0.14	+0.7
2,141,771	+		Sama_1751	0.14	+1.2
2,141,771	+		Sama_1751	0.14	+2.6
2,141,771	+		Sama_1751	0.14	-0.9
2,141,772	-		Sama_1751	0.14	+1.7
2,141,772	-		Sama_1751	0.14	+1.3
2,141,772	-		Sama_1751	0.14	-1.8
2,141,772	-		Sama_1751	0.14	+0.6
2,141,775	-		Sama_1751	0.15	-0.4
2,141,820	+		Sama_1751	0.20	-1.3
2,141,821	-		Sama_1751	0.20	-0.4
2,141,821	-		Sama_1751	0.20	+1.0
2,141,855	-		Sama_1751	0.23	+1.6
2,141,864	+		Sama_1751	0.24	-0.0
2,141,998	+		Sama_1751	0.39	+0.2
2,142,023	+		Sama_1751	0.42	+0.4
2,142,024	-		Sama_1751	0.42	-1.8
2,142,035	+		Sama_1751	0.43	-1.4