Strain Fitness in Shewanella amazonensis SB2B around Sama_1061

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
1,283,374	+		Sama_1059	0.67	+1.7
1,283,375	-		Sama_1059	0.67	-0.2
1,283,398	-		Sama_1059	0.73	+0.6
1,283,415	+		Sama_1059	0.77	-1.2
1,283,416	-		Sama_1059	0.77	-0.0
1,283,416	-		Sama_1059	0.77	+3.0
1,283,417	+		Sama_1059	0.77	+0.1
1,283,418	-		Sama_1059	0.78	-1.7
1,283,434	-		Sama_1059	0.82	+1.8
1,283,434	-		Sama_1059	0.82	-1.2
1,283,434	-		Sama_1059	0.82	-0.0
1,283,445	-		Sama_1059	0.84	-2.2
1,283,468	+		Sama_1059	0.90	-0.3
1,283,518	-				+0.1
1,283,547	-				+0.3
1,283,568	+				+0.1
1,283,616	+				-2.3
1,283,616	+				-0.8
1,283,620	+				+0.4
1,283,620	+				+0.8
1,283,620	+				-2.3
1,283,620	+				+1.4
1,283,620	+				-2.0
1,283,621	-				+0.1
1,283,621	-				-1.7
1,283,621	-				-1.5
1,283,621	-				-0.5
1,283,621	-				+0.4
1,283,694	+		Sama_1060	0.13	+1.0
1,283,697	+		Sama_1060	0.13	+0.3
1,283,697	+		Sama_1060	0.13	-0.3
1,283,697	+		Sama_1060	0.13	+0.3
1,283,697	+		Sama_1060	0.13	+0.2
1,283,698	-		Sama_1060	0.13	-0.9
1,283,698	-		Sama_1060	0.13	-2.5
1,283,698	-		Sama_1060	0.13	+0.8
1,283,797	+		Sama_1060	0.29	-0.5
1,283,797	+		Sama_1060	0.29	+0.4
1,283,842	+		Sama_1060	0.37	-0.7
1,283,842	+		Sama_1060	0.37	+0.7
1,283,842	+		Sama_1060	0.37	-1.2
1,283,856	+		Sama_1060	0.39	-1.4
1,283,856	+		Sama_1060	0.39	+0.4
1,283,864	+		Sama_1060	0.40	-0.7
1,283,923	+		Sama_1060	0.50	-0.5
1,283,923	+		Sama_1060	0.50	+1.5
1,283,923	+		Sama_1060	0.50	-0.7
1,283,923	+		Sama_1060	0.50	+0.0
1,283,923	+		Sama_1060	0.50	+0.4
1,283,923	+		Sama_1060	0.50	-2.2
1,283,924	-		Sama_1060	0.50	+1.0
1,283,924	-		Sama_1060	0.50	+0.3
1,283,924	-		Sama_1060	0.50	+0.3
1,283,924	-		Sama_1060	0.50	+0.3
1,283,924	-		Sama_1060	0.50	-0.1
1,283,985	+		Sama_1060	0.60	-0.6
1,283,986	-		Sama_1060	0.60	-0.4
1,284,018	+		Sama_1060	0.66	-2.5
1,284,019	-		Sama_1060	0.66	-0.5
1,284,019	-		Sama_1060	0.66	-1.0
1,284,019	-		Sama_1060	0.66	+0.7
1,284,026	+		Sama_1060	0.67	+0.8
1,284,027	-		Sama_1060	0.67	+0.3
1,284,052	+		Sama_1060	0.71	+0.2
1,284,061	+		Sama_1060	0.73	-0.0
1,284,061	+		Sama_1060	0.73	+0.7
1,284,061	+		Sama_1060	0.73	+0.1
1,284,062	-		Sama_1060	0.73	+0.3
1,284,062	-		Sama_1060	0.73	+0.8
1,284,100	-		Sama_1060	0.79	+0.4
1,284,157	+		Sama_1060	0.88	+0.6
1,284,158	-		Sama_1060	0.88	+1.5
1,284,169	+				+2.2
1,284,169	+				-0.7
1,284,180	+				+0.1
1,284,180	+				-0.1
1,284,181	-				-0.2
1,284,281	+				-0.5
1,284,281	+				+1.7
1,284,282	-				+0.7
1,284,282	-				-0.6
1,284,282	-				-2.2
1,284,307	-				+0.0
1,284,307	-				-0.6
1,284,332	-				-0.3
1,284,347	-				-1.6
1,284,361	+				+0.8
1,284,384	-				+0.7
1,284,440	+				-0.9
1,284,442	+				+0.4
1,284,442	+				-1.6
1,284,442	+				-0.6
1,284,442	+				+0.8
1,284,442	+				-1.3
1,284,442	+				-0.2
1,284,442	+				+1.2
1,284,443	-				+2.0
1,284,443	-				+0.1
1,284,443	-				-1.5
1,284,443	-				-0.8
1,284,443	-				+0.4
1,284,456	-				-0.2
1,284,456	-				-0.2
1,284,512	+				-0.9
1,284,513	-				-0.0
1,284,553	+				+0.2
1,284,619	+		Sama_1061	0.11	+0.6
1,284,619	+		Sama_1061	0.11	-0.3
1,284,620	-		Sama_1061	0.11	+0.8
1,284,622	+		Sama_1061	0.11	-0.2
1,284,623	-		Sama_1061	0.11	+1.4
1,284,623	-		Sama_1061	0.11	-0.0
1,284,691	+		Sama_1061	0.14	+1.4
1,284,692	-		Sama_1061	0.14	+0.4
1,284,692	-		Sama_1061	0.14	+0.8
1,284,731	-		Sama_1061	0.16	-0.7
1,284,731	-		Sama_1061	0.16	-0.2
1,284,731	-		Sama_1061	0.16	+0.3
1,284,731	-		Sama_1061	0.16	+1.5
1,284,764	-		Sama_1061	0.17	-0.8
1,284,850	+		Sama_1061	0.21	-0.6
1,284,850	+		Sama_1061	0.21	-0.8
1,284,850	+		Sama_1061	0.21	+0.6
1,284,851	-		Sama_1061	0.21	-0.5
1,284,949	+		Sama_1061	0.25	+1.1
1,284,950	-		Sama_1061	0.25	+2.2
1,284,964	+		Sama_1061	0.26	+0.7
1,284,965	-		Sama_1061	0.26	-0.5
1,285,018	+		Sama_1061	0.28	-0.6
1,285,055	-		Sama_1061	0.30	-2.2
1,285,084	+		Sama_1061	0.31	-0.7
1,285,084	+		Sama_1061	0.31	+3.4
1,285,084	+		Sama_1061	0.31	-2.5
1,285,084	+		Sama_1061	0.31	+0.8
1,285,085	-		Sama_1061	0.31	-0.1
1,285,085	-		Sama_1061	0.31	+2.8
1,285,087	+		Sama_1061	0.31	-0.1
1,285,088	-		Sama_1061	0.31	-0.5
1,285,088	-		Sama_1061	0.31	-0.4
1,285,096	+		Sama_1061	0.32	-0.0
1,285,097	-		Sama_1061	0.32	-0.5
1,285,097	-		Sama_1061	0.32	+0.3
1,285,097	-		Sama_1061	0.32	-1.2
1,285,097	-		Sama_1061	0.32	-2.0
1,285,097	-		Sama_1061	0.32	-0.2
1,285,100	+		Sama_1061	0.32	+0.1
1,285,100	+		Sama_1061	0.32	+1.6
1,285,101	-		Sama_1061	0.32	+0.5
1,285,101	-		Sama_1061	0.32	+0.4
1,285,107	+		Sama_1061	0.32	-0.2
1,285,108	-		Sama_1061	0.32	-2.4
1,285,108	-		Sama_1061	0.32	+0.6
1,285,108	-		Sama_1061	0.32	+0.8
1,285,119	+		Sama_1061	0.33	-0.7
1,285,120	-		Sama_1061	0.33	-1.9
1,285,140	+		Sama_1061	0.34	+0.7
1,285,156	+		Sama_1061	0.34	-0.9
1,285,156	+		Sama_1061	0.34	-0.7
1,285,157	-		Sama_1061	0.34	+0.5
1,285,157	-		Sama_1061	0.34	-1.5
1,285,157	-		Sama_1061	0.34	-1.2
1,285,226	-		Sama_1061	0.37	-0.6
1,285,334	-		Sama_1061	0.42	+0.7
1,285,334	-		Sama_1061	0.42	+1.6
1,285,334	-		Sama_1061	0.42	+0.8
1,285,394	-		Sama_1061	0.45	-0.6
1,285,394	-		Sama_1061	0.45	-1.0
1,285,394	-		Sama_1061	0.45	+0.8
1,285,397	-		Sama_1061	0.45	+0.4
1,285,408	-		Sama_1061	0.45	-0.0
1,285,409	+		Sama_1061	0.45	+0.8
1,285,410	-		Sama_1061	0.45	-0.2
1,285,428	+		Sama_1061	0.46	+0.2
1,285,428	+		Sama_1061	0.46	+0.4
1,285,428	+		Sama_1061	0.46	-1.7
1,285,429	-		Sama_1061	0.46	+0.8
1,285,429	-		Sama_1061	0.46	+1.4
1,285,429	-		Sama_1061	0.46	+0.4
1,285,429	-		Sama_1061	0.46	+0.0
1,285,429	-		Sama_1061	0.46	+0.5
1,285,432	+		Sama_1061	0.46	-2.7
1,285,432	+		Sama_1061	0.46	+0.8
1,285,432	+		Sama_1061	0.46	+0.6
1,285,433	-		Sama_1061	0.46	-0.4
1,285,433	-		Sama_1061	0.46	-2.0
1,285,433	-		Sama_1061	0.46	+0.6
1,285,476	+		Sama_1061	0.48	+0.8
1,285,476	+		Sama_1061	0.48	-0.2
1,285,476	+		Sama_1061	0.48	+0.0
1,285,476	+		Sama_1061	0.48	+0.2
1,285,476	+		Sama_1061	0.48	+0.2
1,285,477	-		Sama_1061	0.48	+0.1
1,285,477	-		Sama_1061	0.48	+1.4
1,285,477	-		Sama_1061	0.48	+0.3
1,285,500	+		Sama_1061	0.49	+0.2
1,285,501	-		Sama_1061	0.49	+3.4
1,285,501	-		Sama_1061	0.49	+0.2
1,285,526	+		Sama_1061	0.50	+0.1
1,285,526	+		Sama_1061	0.50	-0.3
1,285,527	-		Sama_1061	0.50	-0.6
1,285,607	+		Sama_1061	0.54	-0.1
1,285,608	-		Sama_1061	0.54	+0.8
1,285,610	-		Sama_1061	0.54	-0.7
1,285,742	-		Sama_1061	0.60	+1.6
1,285,742	-		Sama_1061	0.60	-0.7
1,285,742	-		Sama_1061	0.60	-1.0
1,285,777	+		Sama_1061	0.61	-0.2
1,285,778	-		Sama_1061	0.61	+0.6
1,285,778	-		Sama_1061	0.61	-1.2
1,285,778	-		Sama_1061	0.61	-1.0
1,285,778	-		Sama_1061	0.61	-1.9
1,285,780	+		Sama_1061	0.61	+0.8
1,285,780	+		Sama_1061	0.61	+0.8
1,285,810	+		Sama_1061	0.63	-0.3
1,285,810	+		Sama_1061	0.63	+1.3
1,285,810	+		Sama_1061	0.63	+0.3
1,285,810	+		Sama_1061	0.63	+1.3
1,285,810	+		Sama_1061	0.63	-2.3
1,285,810	+		Sama_1061	0.63	-0.6
1,285,810	+		Sama_1061	0.63	-1.2
1,285,811	-		Sama_1061	0.63	-0.3
1,285,811	-		Sama_1061	0.63	+0.8
1,285,813	+		Sama_1061	0.63	-2.0
1,285,919	-		Sama_1061	0.67	-2.0
1,285,919	-		Sama_1061	0.67	-0.7
1,285,919	-		Sama_1061	0.67	+0.4
1,285,919	-		Sama_1061	0.67	-2.2
1,285,919	-		Sama_1061	0.67	-0.0
1,285,957	+		Sama_1061	0.69	-0.5
1,285,957	+		Sama_1061	0.69	+0.8
1,285,958	-		Sama_1061	0.69	+0.7
1,285,974	-		Sama_1061	0.70	-0.2
1,285,974	-		Sama_1061	0.70	+1.0
1,286,033	-		Sama_1061	0.72	-0.4
1,286,033	-		Sama_1061	0.72	+0.3
1,286,033	-		Sama_1061	0.72	+2.0
1,286,043	+		Sama_1061	0.73	+0.7
1,286,043	+		Sama_1061	0.73	-2.3
1,286,043	+		Sama_1061	0.73	+2.8
1,286,065	+		Sama_1061	0.74	-1.7
1,286,066	-		Sama_1061	0.74	-0.2
1,286,066	-		Sama_1061	0.74	+0.3
1,286,066	-		Sama_1061	0.74	-1.2
1,286,066	-		Sama_1061	0.74	+0.5
1,286,066	-		Sama_1061	0.74	-0.5
1,286,068	+		Sama_1061	0.74	-0.5
1,286,068	+		Sama_1061	0.74	-0.5
1,286,068	+		Sama_1061	0.74	-0.5
1,286,069	-		Sama_1061	0.74	-0.2
1,286,075	+		Sama_1061	0.74	-1.0
1,286,076	-		Sama_1061	0.74	-2.7
1,286,378	+		Sama_1061	0.87	-0.9
1,286,385	+		Sama_1061	0.88	-1.0
1,286,386	-		Sama_1061	0.88	+1.0
1,286,387	+		Sama_1061	0.88	+0.7
1,286,388	-		Sama_1061	0.88	+1.2
1,286,388	-		Sama_1061	0.88	+1.4
1,286,422	+		Sama_1061	0.89	+0.3
1,286,422	+		Sama_1061	0.89	+0.8
1,286,423	-		Sama_1061	0.89	-1.2
1,286,423	-		Sama_1061	0.89	+0.8
1,286,423	-		Sama_1061	0.89	-1.7
1,286,423	-		Sama_1061	0.89	-1.7
1,286,425	+		Sama_1061	0.89	-0.1
1,286,425	+		Sama_1061	0.89	-0.8
1,286,425	+		Sama_1061	0.89	-0.4
1,286,425	+		Sama_1061	0.89	-1.2
1,286,425	+		Sama_1061	0.89	-1.0
1,286,426	-		Sama_1061	0.89	-0.7
1,286,426	-		Sama_1061	0.89	+0.4
1,286,426	-		Sama_1061	0.89	-0.6
1,286,426	-		Sama_1061	0.89	+0.4
1,286,426	-		Sama_1061	0.89	+0.7
1,286,426	-		Sama_1061	0.89	+0.2
1,286,426	-		Sama_1061	0.89	-0.2
1,286,426	-		Sama_1061	0.89	-0.4
1,286,426	-		Sama_1061	0.89	-0.2
1,286,426	-		Sama_1061	0.89	+0.2
1,286,426	-		Sama_1061	0.89	-0.2
1,286,426	-		Sama_1061	0.89	-0.2
1,286,665	+				+0.1
1,286,665	+				-0.8
1,286,665	+				+0.3
1,286,666	-				-1.4
1,286,666	-				-0.2
1,286,666	-				-2.0
1,286,666	-				+0.1
1,286,666	-				-1.9
1,286,671	+				-0.7
1,286,671	+				-0.2
1,286,671	+				+0.4
1,286,671	+				-1.2
1,286,671	+				-0.5
1,286,672	-				-0.0
1,286,672	-				+0.1
1,286,672	-				-0.1
1,286,672	-				+1.2
1,286,672	-				+0.8
1,286,686	+				-0.6
1,286,686	+				+0.3
1,286,697	+				+1.8
1,286,698	-				-0.6
1,286,722	-				-0.9
1,286,722	-				+3.2
1,286,728	+				-1.2
1,286,729	-				+0.4
1,286,729	-				-0.7
1,286,756	+				-0.6
1,286,760	+				-1.0
1,286,760	+				-2.0
1,286,760	+				+0.5
1,286,760	+				-1.5
1,286,760	+				+1.2
1,286,760	+				-0.0
1,286,760	+				-0.0
1,286,760	+				-2.2
1,286,760	+				-0.5
1,286,760	+				+0.3
1,286,760	+				-1.7
1,286,761	-				+2.1
1,286,761	-				-0.7
1,286,761	-				-0.7
1,286,761	-				+1.8
1,286,761	-				+1.3
1,286,761	-				-2.0
1,286,761	-				+0.8
1,286,761	-				-2.5
1,286,761	-				-1.1
1,286,761	-				-1.2
1,286,911	+		Sama_1062	0.15	+0.1
1,286,911	+		Sama_1062	0.15	-0.2
1,286,911	+		Sama_1062	0.15	-0.2
1,286,912	-		Sama_1062	0.16	-0.6
1,286,912	-		Sama_1062	0.16	+0.8
1,286,912	-		Sama_1062	0.16	+1.1
1,286,912	-		Sama_1062	0.16	-1.2
1,286,971	+		Sama_1062	0.20	-1.2
1,286,971	+		Sama_1062	0.20	-1.3
1,287,068	+		Sama_1062	0.27	-2.6
1,287,069	-		Sama_1062	0.27	-0.1
1,287,069	-		Sama_1062	0.27	-2.6
1,287,069	-		Sama_1062	0.27	-1.2
1,287,116	+		Sama_1062	0.31	-1.0
1,287,116	+		Sama_1062	0.31	+0.3
1,287,117	-		Sama_1062	0.31	+0.8
1,287,126	+		Sama_1062	0.32	-3.2
1,287,185	+		Sama_1062	0.36	-1.7
1,287,234	+		Sama_1062	0.40	-0.0
1,287,242	+		Sama_1062	0.41	-0.7
1,287,243	-		Sama_1062	0.41	-0.6
1,287,328	-		Sama_1062	0.47	+1.8
1,287,355	-		Sama_1062	0.49	+1.6
1,287,403	-		Sama_1062	0.53	+0.0
1,287,411	+		Sama_1062	0.53	-1.0
1,287,412	-		Sama_1062	0.54	-1.2
1,287,412	-		Sama_1062	0.54	-2.0
1,287,433	-		Sama_1062	0.55	-2.3
1,287,488	-		Sama_1062	0.59	+0.2
1,287,517	+		Sama_1062	0.62	-1.5
1,287,517	+		Sama_1062	0.62	-1.6
1,287,540	+		Sama_1062	0.63	-1.6
1,287,567	+		Sama_1062	0.65	-0.4
1,287,567	+		Sama_1062	0.65	-1.2
1,287,568	-		Sama_1062	0.65	+0.3