Strain Fitness in Shewanella amazonensis SB2B around Sama_1029

Experiment: Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Putrescine
1,243,796	+				+3.3
1,243,796	+				-0.6
1,243,796	+				+0.7
1,243,797	-				+0.8
1,243,797	-				+1.3
1,243,797	-				+0.2
1,243,797	-				+0.2
1,243,797	-				+0.3
1,243,801	+				-0.2
1,243,801	+				-0.6
1,243,801	+				-0.2
1,243,801	+				-0.2
1,243,801	+				-1.5
1,243,801	+				-0.7
1,243,802	-				-0.0
1,243,802	-				-0.8
1,243,802	-				-1.2
1,243,842	+				+0.8
1,243,842	+				+0.6
1,243,843	-				-1.7
1,243,905	+				-2.3
1,244,069	+		Sama_1028	0.22	+0.8
1,244,069	+		Sama_1028	0.22	+0.4
1,244,070	-		Sama_1028	0.22	+0.4
1,244,079	+		Sama_1028	0.23	-2.5
1,244,088	+		Sama_1028	0.24	-1.0
1,244,089	-		Sama_1028	0.24	-0.4
1,244,121	+		Sama_1028	0.28	-1.2
1,244,122	-		Sama_1028	0.28	-0.3
1,244,122	-		Sama_1028	0.28	-0.1
1,244,122	-		Sama_1028	0.28	+2.4
1,244,122	-		Sama_1028	0.28	-0.5
1,244,122	-		Sama_1028	0.28	-2.0
1,244,122	-		Sama_1028	0.28	+0.3
1,244,159	+		Sama_1028	0.32	+2.2
1,244,177	+		Sama_1028	0.34	+0.1
1,244,177	+		Sama_1028	0.34	+0.0
1,244,178	-		Sama_1028	0.34	+1.1
1,244,178	-		Sama_1028	0.34	-0.8
1,244,195	+		Sama_1028	0.36	+0.6
1,244,227	-		Sama_1028	0.40	+2.4
1,244,246	+		Sama_1028	0.42	-1.5
1,244,247	-		Sama_1028	0.42	-2.2
1,244,247	-		Sama_1028	0.42	-0.7
1,244,247	-		Sama_1028	0.42	-2.3
1,244,266	+		Sama_1028	0.44	-0.5
1,244,290	+		Sama_1028	0.47	+0.7
1,244,290	+		Sama_1028	0.47	+1.2
1,244,290	+		Sama_1028	0.47	-1.0
1,244,290	+		Sama_1028	0.47	+0.8
1,244,290	+		Sama_1028	0.47	+1.8
1,244,290	+		Sama_1028	0.47	+1.0
1,244,290	+		Sama_1028	0.47	+0.8
1,244,290	+		Sama_1028	0.47	-0.4
1,244,291	-		Sama_1028	0.47	-1.6
1,244,291	-		Sama_1028	0.47	-0.5
1,244,291	-		Sama_1028	0.47	-1.5
1,244,291	-		Sama_1028	0.47	+0.6
1,244,291	-		Sama_1028	0.47	-0.2
1,244,291	-		Sama_1028	0.47	+1.1
1,244,291	-		Sama_1028	0.47	+0.4
1,244,291	-		Sama_1028	0.47	-1.3
1,244,291	-		Sama_1028	0.47	-1.7
1,244,291	-		Sama_1028	0.47	-0.2
1,244,291	-		Sama_1028	0.47	-0.1
1,244,291	-		Sama_1028	0.47	+0.3
1,244,291	-		Sama_1028	0.47	-0.0
1,244,294	+		Sama_1028	0.47	+0.2
1,244,294	+		Sama_1028	0.47	-0.9
1,244,294	+		Sama_1028	0.47	+0.2
1,244,294	+		Sama_1028	0.47	-1.5
1,244,295	-		Sama_1028	0.47	+1.3
1,244,295	-		Sama_1028	0.47	-0.5
1,244,449	+		Sama_1028	0.64	-0.2
1,244,460	+		Sama_1028	0.65	-2.0
1,244,460	+		Sama_1028	0.65	+2.3
1,244,460	+		Sama_1028	0.65	-1.7
1,244,460	+		Sama_1028	0.65	+1.4
1,244,460	+		Sama_1028	0.65	-0.3
1,244,460	+		Sama_1028	0.65	+0.8
1,244,460	+		Sama_1028	0.65	-0.7
1,244,461	-		Sama_1028	0.66	+1.1
1,244,461	-		Sama_1028	0.66	-0.6
1,244,461	-		Sama_1028	0.66	-0.9
1,244,461	-		Sama_1028	0.66	-0.6
1,244,462	+		Sama_1028	0.66	-0.2
1,244,462	+		Sama_1028	0.66	+0.7
1,244,463	-		Sama_1028	0.66	+0.6
1,244,499	+		Sama_1028	0.70	-1.2
1,244,499	+		Sama_1028	0.70	+0.2
1,244,500	-		Sama_1028	0.70	-0.1
1,244,500	-		Sama_1028	0.70	+0.2
1,244,500	-		Sama_1028	0.70	+1.4
1,244,500	-		Sama_1028	0.70	-1.5
1,244,500	-		Sama_1028	0.70	+1.2
1,244,500	-		Sama_1028	0.70	-0.7
1,244,500	-		Sama_1028	0.70	-0.2
1,244,500	-		Sama_1028	0.70	-2.1
1,244,502	+		Sama_1028	0.70	+0.8
1,244,502	+		Sama_1028	0.70	+1.5
1,244,503	-		Sama_1028	0.70	-2.2
1,244,503	-		Sama_1028	0.70	+0.1
1,244,503	-		Sama_1028	0.70	-0.3
1,244,503	-		Sama_1028	0.70	+1.4
1,244,546	+		Sama_1028	0.75	-0.9
1,244,546	+		Sama_1028	0.75	-0.1
1,244,546	+		Sama_1028	0.75	-1.2
1,244,575	+		Sama_1028	0.78	-0.0
1,244,575	+		Sama_1028	0.78	-0.2
1,244,575	+		Sama_1028	0.78	-0.9
1,244,575	+		Sama_1028	0.78	-0.3
1,244,575	+		Sama_1028	0.78	-2.3
1,244,575	+		Sama_1028	0.78	-0.7
1,244,576	-		Sama_1028	0.78	+1.0
1,244,576	-		Sama_1028	0.78	+1.8
1,244,576	-		Sama_1028	0.78	+0.5
1,244,576	-		Sama_1028	0.78	+1.4
1,244,576	-		Sama_1028	0.78	-0.4
1,244,580	+		Sama_1028	0.79	-0.2
1,244,580	+		Sama_1028	0.79	-2.3
1,244,580	+		Sama_1028	0.79	-0.4
1,244,580	+		Sama_1028	0.79	+1.2
1,244,580	+		Sama_1028	0.79	-0.9
1,244,581	-		Sama_1028	0.79	-1.2
1,244,581	-		Sama_1028	0.79	-1.7
1,244,581	-		Sama_1028	0.79	-1.5
1,244,710	+				+0.3
1,244,711	-				-3.0
1,244,711	-				+0.6
1,244,711	-				+0.4
1,244,711	-				+0.7
1,244,711	-				-2.0
1,244,729	+				-1.3
1,244,730	-				-0.0
1,244,756	+				+0.8
1,244,756	+				-0.2
1,244,756	+				-0.1
1,244,756	+				+1.0
1,244,756	+				+0.1
1,244,936	+		Sama_1029	0.69	-0.9
1,244,982	-		Sama_1029	0.88	-0.2
1,244,983	+		Sama_1029	0.88	-0.3
1,244,984	-		Sama_1029	0.89	+0.3
1,244,984	-		Sama_1029	0.89	+0.6
1,244,994	+				-2.0
1,244,995	-				+0.0
1,244,995	-				-1.6
1,244,999	+				+1.1
1,245,000	-				+0.1
1,245,016	-				-1.7
1,245,016	-				-0.6
1,245,016	-				-0.2
1,245,059	+				-0.0
1,245,059	+				+0.3
1,245,105	-		Sama_1030	0.12	-1.1
1,245,105	-		Sama_1030	0.12	+0.3
1,245,148	-		Sama_1030	0.19	-0.7
1,245,239	+		Sama_1030	0.34	-0.9
1,245,249	-		Sama_1030	0.36	+0.1
1,245,250	+		Sama_1030	0.36	-1.1
1,245,250	+		Sama_1030	0.36	+1.6
1,245,250	+		Sama_1030	0.36	-0.7
1,245,250	+		Sama_1030	0.36	-0.2
1,245,251	-		Sama_1030	0.36	-1.3
1,245,251	-		Sama_1030	0.36	+1.3
1,245,251	-		Sama_1030	0.36	+0.4
1,245,251	-		Sama_1030	0.36	+0.3
1,245,251	-		Sama_1030	0.36	+0.2
1,245,251	-		Sama_1030	0.36	+0.4
1,245,251	-		Sama_1030	0.36	+0.8
1,245,251	-		Sama_1030	0.36	-1.8
1,245,251	-		Sama_1030	0.36	+0.2
1,245,251	-		Sama_1030	0.36	-1.2
1,245,251	-		Sama_1030	0.36	-0.8
1,245,251	-		Sama_1030	0.36	+0.3
1,245,251	-		Sama_1030	0.36	+0.0
1,245,263	+		Sama_1030	0.38	+0.8
1,245,263	+		Sama_1030	0.38	+0.2
1,245,264	-		Sama_1030	0.38	-2.2
1,245,278	+		Sama_1030	0.40	-0.2
1,245,279	-		Sama_1030	0.41	-0.0
1,245,279	-		Sama_1030	0.41	-0.1
1,245,279	-		Sama_1030	0.41	-0.2
1,245,284	+		Sama_1030	0.41	-1.2
1,245,285	-		Sama_1030	0.42	-0.5
1,245,303	+		Sama_1030	0.45	-0.2
1,245,304	-		Sama_1030	0.45	+2.2
1,245,334	-		Sama_1030	0.50	-0.6
1,245,334	-		Sama_1030	0.50	-2.2
1,245,367	-		Sama_1030	0.55	+0.4
1,245,367	-		Sama_1030	0.55	-2.2
1,245,374	-		Sama_1030	0.56	-0.0
1,245,483	+		Sama_1030	0.74	-0.6
1,245,483	+		Sama_1030	0.74	-1.2
1,245,484	-		Sama_1030	0.74	-0.8
1,245,484	-		Sama_1030	0.74	+3.0
1,245,484	-		Sama_1030	0.74	+0.4
1,245,484	-		Sama_1030	0.74	-0.7
1,245,538	+		Sama_1030	0.83	-0.6
1,245,539	-		Sama_1030	0.83	-0.5
1,245,547	+		Sama_1030	0.85	+0.1
1,245,547	+		Sama_1030	0.85	+1.0
1,245,547	+		Sama_1030	0.85	-0.4
1,245,548	-		Sama_1030	0.85	-1.5
1,245,576	+		Sama_1030	0.90	+0.6
1,245,577	-		Sama_1030	0.90	+0.3
1,245,577	-		Sama_1030	0.90	+1.6
1,245,644	-				+0.1
1,245,688	+				+4.5
1,245,688	+				+3.9
1,245,688	+				-0.2
1,245,689	-				-2.9
1,245,689	-				-0.7
1,245,693	+				+3.6
1,245,694	-				+3.6
1,245,709	+				+5.7
1,245,709	+				+5.4
1,245,709	+				+5.7
1,245,709	+				+6.1
1,245,709	+				+2.2
1,245,709	+				+5.3
1,245,709	+				+5.0
1,245,710	-				+5.6
1,245,710	-				+4.2
1,245,809	+				+5.1
1,245,809	+				+5.7
1,245,810	-				+5.2
1,245,840	+				+5.5
1,245,840	+				+4.8
1,245,841	-				+3.9
1,245,841	-				+5.2
1,245,842	+				+5.1
1,245,842	+				+5.4
1,245,842	+				+5.3
1,245,843	-				+5.3
1,245,843	-				+5.3
1,245,849	+				+5.0
1,245,849	+				+4.6
1,245,850	-				+4.6
1,245,850	-				+5.4
1,245,850	-				+5.4
1,245,850	-				+5.4
1,245,850	-				+5.0
1,245,850	-				+4.5
1,245,850	-				+5.7
1,245,925	+		Sama_1031	0.11	+6.1
1,245,925	+		Sama_1031	0.11	+4.8
1,245,925	+		Sama_1031	0.11	+5.1
1,245,926	-		Sama_1031	0.11	+5.6
1,245,957	+		Sama_1031	0.12	+4.1
1,245,957	+		Sama_1031	0.12	+5.2