Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO4195 and SO4196 are separated by 324 nucleotides SO4196 and menG-2 are separated by 323 nucleotides menG-2 and SO4198 are separated by 366 nucleotides
SO4195: SO4195 - PAP2 family protein (NCBI ptt file), at 4,363,472 to 4,363,984
SO4195
SO4196: SO4196 - conserved hypothetical protein (NCBI ptt file), at 4,364,309 to 4,364,557
SO4196
SO4197: menG-2 - S-adenosylmethionine:2-demethylmenaquinone methyltransferase (NCBI ptt file), at 4,364,881 to 4,365,366
menG-2
SO4198: SO4198 - arginase family protein (NCBI ptt file), at 4,365,733 to 4,366,548
SO4198
Position (kb) 4364
4365
4366 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 4363.922 kb on - strand, within SO4195 at 4364.061 kb on - strand at 4364.134 kb on + strand at 4364.142 kb on - strand at 4364.153 kb on + strand at 4364.153 kb on + strand at 4364.153 kb on + strand at 4364.153 kb on + strand at 4364.161 kb on - strand at 4364.187 kb on - strand at 4364.190 kb on + strand at 4364.245 kb on - strand at 4364.256 kb on + strand at 4364.264 kb on - strand at 4364.264 kb on - strand at 4364.264 kb on - strand at 4364.403 kb on + strand, within SO4196 at 4364.448 kb on - strand, within SO4196 at 4364.581 kb on - strand at 4364.581 kb on - strand at 4364.585 kb on + strand at 4364.787 kb on - strand at 4364.821 kb on + strand at 4364.829 kb on - strand at 4364.847 kb on + strand at 4364.847 kb on + strand at 4364.855 kb on - strand at 4364.894 kb on + strand at 4364.894 kb on + strand at 4364.894 kb on + strand at 4364.894 kb on + strand at 4364.894 kb on + strand at 4364.894 kb on + strand at 4364.902 kb on - strand at 4364.902 kb on - strand at 4364.902 kb on - strand at 4364.902 kb on - strand at 4364.902 kb on - strand at 4364.902 kb on - strand at 4364.902 kb on - strand at 4364.902 kb on - strand at 4364.949 kb on - strand, within menG-2 at 4365.052 kb on + strand, within menG-2 at 4365.052 kb on + strand, within menG-2 at 4365.081 kb on + strand, within menG-2 at 4365.346 kb on + strand at 4365.356 kb on + strand at 4365.356 kb on + strand at 4365.364 kb on - strand at 4365.364 kb on - strand at 4365.540 kb on + strand at 4365.627 kb on + strand at 4365.720 kb on - strand at 4365.731 kb on + strand at 4366.053 kb on + strand, within SO4198 at 4366.131 kb on - strand, within SO4198 at 4366.138 kb on - strand, within SO4198 at 4366.138 kb on - strand, within SO4198 at 4366.155 kb on + strand, within SO4198 at 4366.227 kb on + strand, within SO4198 at 4366.232 kb on + strand, within SO4198 at 4366.240 kb on - strand, within SO4198 at 4366.246 kb on + strand, within SO4198 at 4366.269 kb on + strand, within SO4198 at 4366.362 kb on + strand, within SO4198
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 4,363,922 - SO4195 0.88 -0.4 4,364,061 - +2.0 4,364,134 + +0.3 4,364,142 - -1.5 4,364,153 + +1.5 4,364,153 + +0.1 4,364,153 + +0.2 4,364,153 + +0.2 4,364,161 - -1.2 4,364,187 - +0.3 4,364,190 + -2.0 4,364,245 - +0.3 4,364,256 + -0.5 4,364,264 - +0.4 4,364,264 - +0.6 4,364,264 - -0.1 4,364,403 + SO4196 0.38 +0.2 4,364,448 - SO4196 0.56 -0.1 4,364,581 - +0.6 4,364,581 - +0.1 4,364,585 + +1.7 4,364,787 - -0.5 4,364,821 + -0.9 4,364,829 - -2.4 4,364,847 + -3.0 4,364,847 + -2.4 4,364,855 - -2.6 4,364,894 + -0.6 4,364,894 + -3.7 4,364,894 + -4.5 4,364,894 + -5.0 4,364,894 + -4.4 4,364,894 + -2.3 4,364,902 - -3.9 4,364,902 - -2.2 4,364,902 - -4.0 4,364,902 - -3.6 4,364,902 - -3.6 4,364,902 - -4.6 4,364,902 - -2.1 4,364,902 - -4.0 4,364,949 - menG-2 SO4197 0.14 -2.2 4,365,052 + menG-2 SO4197 0.35 -2.6 4,365,052 + menG-2 SO4197 0.35 -0.5 4,365,081 + menG-2 SO4197 0.41 -3.6 4,365,346 + -3.3 4,365,356 + -3.0 4,365,356 + -2.3 4,365,364 - -2.7 4,365,364 - -3.0 4,365,540 + -1.0 4,365,627 + +0.3 4,365,720 - +0.3 4,365,731 + -0.8 4,366,053 + SO4198 0.39 -0.3 4,366,131 - SO4198 0.49 -0.6 4,366,138 - SO4198 0.50 -0.4 4,366,138 - SO4198 0.50 -0.6 4,366,155 + SO4198 0.52 -1.1 4,366,227 + SO4198 0.61 -0.8 4,366,232 + SO4198 0.61 -0.6 4,366,240 - SO4198 0.62 -1.2 4,366,246 + SO4198 0.63 -0.8 4,366,269 + SO4198 0.66 -0.3 4,366,362 + SO4198 0.77 -0.3
Or see this region's nucleotide sequence