Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lysC and SO3987 are separated by 568 nucleotides SO3987 and arcA are separated by 582 nucleotides
SO3986: lysC - aspartokinase III, lysine-sensitive (NCBI ptt file), at 4,123,060 to 4,124,415
lysC
SO3987: SO3987 - conserved hypothetical protein (NCBI ptt file), at 4,124,984 to 4,125,418
SO3987
SO3988: arcA - aerobic respiration control protein ArcA (NCBI ptt file), at 4,126,001 to 4,126,717
arcA
Position (kb) 4124
4125
4126 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4124.056 kb on - strand, within lysC at 4124.077 kb on - strand, within lysC at 4124.098 kb on - strand, within lysC at 4124.107 kb on + strand, within lysC at 4124.107 kb on + strand, within lysC at 4124.149 kb on + strand, within lysC at 4124.196 kb on - strand, within lysC at 4124.256 kb on + strand, within lysC at 4124.335 kb on - strand at 4124.349 kb on - strand at 4124.351 kb on + strand at 4124.542 kb on - strand at 4124.607 kb on + strand at 4124.648 kb on - strand at 4124.693 kb on + strand at 4124.693 kb on + strand at 4124.701 kb on - strand at 4124.774 kb on + strand at 4124.782 kb on - strand at 4124.873 kb on + strand at 4124.977 kb on + strand at 4125.004 kb on - strand at 4125.005 kb on + strand at 4125.028 kb on - strand, within SO3987 at 4125.076 kb on + strand, within SO3987 at 4125.076 kb on + strand, within SO3987 at 4125.084 kb on - strand, within SO3987 at 4125.084 kb on - strand, within SO3987 at 4125.084 kb on - strand, within SO3987 at 4125.084 kb on - strand, within SO3987 at 4125.084 kb on - strand, within SO3987 at 4125.084 kb on - strand, within SO3987 at 4125.088 kb on + strand, within SO3987 at 4125.088 kb on + strand, within SO3987 at 4125.094 kb on - strand, within SO3987 at 4125.103 kb on - strand, within SO3987 at 4125.171 kb on + strand, within SO3987 at 4125.179 kb on - strand, within SO3987 at 4125.179 kb on - strand, within SO3987 at 4125.209 kb on + strand, within SO3987 at 4125.217 kb on - strand, within SO3987 at 4125.262 kb on - strand, within SO3987 at 4125.264 kb on - strand, within SO3987 at 4125.288 kb on + strand, within SO3987 at 4125.288 kb on + strand, within SO3987 at 4125.296 kb on - strand, within SO3987 at 4125.296 kb on - strand, within SO3987 at 4125.381 kb on + strand at 4125.446 kb on + strand at 4125.451 kb on + strand at 4125.655 kb on - strand at 4125.656 kb on - strand at 4125.675 kb on - strand at 4125.700 kb on + strand at 4125.700 kb on + strand at 4125.708 kb on - strand at 4125.708 kb on - strand at 4125.710 kb on + strand at 4125.715 kb on - strand at 4125.788 kb on + strand at 4125.788 kb on + strand at 4125.834 kb on + strand at 4125.834 kb on + strand at 4125.842 kb on + strand at 4125.842 kb on + strand at 4125.842 kb on + strand at 4125.855 kb on + strand at 4125.855 kb on + strand at 4125.855 kb on + strand at 4125.855 kb on + strand at 4125.855 kb on + strand at 4125.863 kb on - strand at 4125.863 kb on - strand at 4125.877 kb on + strand at 4125.900 kb on + strand at 4126.349 kb on + strand, within arcA
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 4,124,056 - lysC SO3986 0.73 -3.4 4,124,077 - lysC SO3986 0.75 -3.1 4,124,098 - lysC SO3986 0.77 -2.6 4,124,107 + lysC SO3986 0.77 -2.6 4,124,107 + lysC SO3986 0.77 -2.4 4,124,149 + lysC SO3986 0.80 -2.1 4,124,196 - lysC SO3986 0.84 -0.6 4,124,256 + lysC SO3986 0.88 -2.0 4,124,335 - -2.4 4,124,349 - -2.7 4,124,351 + -1.3 4,124,542 - -1.5 4,124,607 + -2.1 4,124,648 - -3.1 4,124,693 + -2.6 4,124,693 + -1.9 4,124,701 - -3.5 4,124,774 + -2.2 4,124,782 - -1.0 4,124,873 + +0.7 4,124,977 + +0.1 4,125,004 - +0.6 4,125,005 + +1.6 4,125,028 - SO3987 0.10 +0.9 4,125,076 + SO3987 0.21 +2.3 4,125,076 + SO3987 0.21 +0.6 4,125,084 - SO3987 0.23 +1.1 4,125,084 - SO3987 0.23 +1.7 4,125,084 - SO3987 0.23 +1.5 4,125,084 - SO3987 0.23 +1.2 4,125,084 - SO3987 0.23 +1.4 4,125,084 - SO3987 0.23 +0.9 4,125,088 + SO3987 0.24 +2.2 4,125,088 + SO3987 0.24 +1.3 4,125,094 - SO3987 0.25 +1.3 4,125,103 - SO3987 0.27 +1.0 4,125,171 + SO3987 0.43 +1.2 4,125,179 - SO3987 0.45 +1.2 4,125,179 - SO3987 0.45 +1.2 4,125,209 + SO3987 0.52 +1.3 4,125,217 - SO3987 0.54 +1.5 4,125,262 - SO3987 0.64 +1.9 4,125,264 - SO3987 0.64 +0.8 4,125,288 + SO3987 0.70 +1.2 4,125,288 + SO3987 0.70 +1.3 4,125,296 - SO3987 0.72 +1.0 4,125,296 - SO3987 0.72 +0.8 4,125,381 + +1.5 4,125,446 + +1.6 4,125,451 + +1.4 4,125,655 - +0.7 4,125,656 - -2.4 4,125,675 - -1.1 4,125,700 + -2.4 4,125,700 + -0.9 4,125,708 - -2.4 4,125,708 - -2.3 4,125,710 + -1.7 4,125,715 - -1.5 4,125,788 + -2.2 4,125,788 + -1.2 4,125,834 + -1.6 4,125,834 + -1.4 4,125,842 + -2.3 4,125,842 + -1.6 4,125,842 + -2.3 4,125,855 + -2.0 4,125,855 + -1.4 4,125,855 + -2.9 4,125,855 + -1.8 4,125,855 + -2.4 4,125,863 - -1.6 4,125,863 - -1.6 4,125,877 + -1.8 4,125,900 + -1.5 4,126,349 + arcA SO3988 0.49 -0.1
Or see this region's nucleotide sequence