Strain Fitness in Shewanella oneidensis MR-1 around SO1205

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntinfB and rbfA are separated by 63 nucleotidesrbfA and SO_1206 overlap by 1 nucleotides SO1204: infB - translation initiation factor IF-2 (NCBI ptt file), at 1,247,966 to 1,250,623 infB SO1205: rbfA - ribosome-binding factor A (NCBI ptt file), at 1,250,687 to 1,251,130 rbfA SO_1206: SO_1206 - no description, at 1,251,130 to 1,252,083 _1206 Position (kb) 1250 1251 1252Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1251.028 kb on + strand, within rbfAat 1251.125 kb on + strandat 1251.250 kb on + strand, within SO_1206at 1251.404 kb on + strand, within SO_1206at 1251.656 kb on - strand, within SO_1206at 1251.765 kb on + strand, within SO_1206at 1251.770 kb on + strand, within SO_1206at 1251.770 kb on + strand, within SO_1206at 1251.770 kb on + strand, within SO_1206at 1251.770 kb on + strand, within SO_1206at 1251.770 kb on + strand, within SO_1206at 1251.770 kb on + strand, within SO_1206at 1251.778 kb on - strand, within SO_1206at 1251.778 kb on - strand, within SO_1206at 1251.778 kb on - strand, within SO_1206at 1251.778 kb on - strand, within SO_1206at 1251.778 kb on - strand, within SO_1206at 1251.778 kb on - strand, within SO_1206at 1251.900 kb on + strand, within SO_1206at 1251.908 kb on - strand, within SO_1206at 1251.983 kb on + strand, within SO_1206at 1252.068 kb on + strandat 1252.076 kb on - strandat 1252.076 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,251,028 + rbfA SO1205 0.77 -3.1
1,251,125 + +0.1
1,251,250 + SO_1206 0.13 -4.2
1,251,404 + SO_1206 0.29 -3.2
1,251,656 - SO_1206 0.55 -4.5
1,251,765 + SO_1206 0.67 -1.8
1,251,770 + SO_1206 0.67 -2.8
1,251,770 + SO_1206 0.67 -3.4
1,251,770 + SO_1206 0.67 -2.6
1,251,770 + SO_1206 0.67 -3.2
1,251,770 + SO_1206 0.67 -3.3
1,251,770 + SO_1206 0.67 -3.0
1,251,778 - SO_1206 0.68 -4.6
1,251,778 - SO_1206 0.68 -3.1
1,251,778 - SO_1206 0.68 -3.0
1,251,778 - SO_1206 0.68 -2.1
1,251,778 - SO_1206 0.68 -4.5
1,251,778 - SO_1206 0.68 -4.2
1,251,900 + SO_1206 0.81 -4.0
1,251,908 - SO_1206 0.82 -3.3
1,251,983 + SO_1206 0.89 -3.1
1,252,068 + -0.2
1,252,076 - +0.0
1,252,076 - -0.3

Or see this region's nucleotide sequence