Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0625 and SO0627 are separated by 159 nucleotides SO0627 and SO0628 are separated by 171 nucleotides
SO0625: SO0625 - conserved domain protein (NCBI ptt file), at 651,800 to 652,579
SO0625
SO0627: SO0627 - putative 2'-5' RNA ligase (NCBI ptt file), at 652,739 to 653,296
SO0627
SO0628: SO0628 - GGDEF domain protein (NCBI ptt file), at 653,468 to 655,654
SO0628
Position (kb) 652
653
654 Strain fitness (log2 ratio) -2
-1
0
1
2 at 651.763 kb on + strand at 651.771 kb on - strand at 651.773 kb on - strand at 651.792 kb on + strand at 651.800 kb on - strand at 651.808 kb on - strand at 651.808 kb on - strand at 651.808 kb on - strand at 651.816 kb on + strand at 651.835 kb on + strand at 651.838 kb on - strand at 651.848 kb on + strand at 651.848 kb on + strand at 651.856 kb on - strand at 651.856 kb on - strand at 651.857 kb on - strand at 651.928 kb on + strand, within SO0625 at 651.938 kb on + strand, within SO0625 at 651.946 kb on - strand, within SO0625 at 651.946 kb on - strand, within SO0625 at 651.946 kb on - strand, within SO0625 at 651.946 kb on - strand, within SO0625 at 651.946 kb on - strand, within SO0625 at 651.946 kb on - strand, within SO0625 at 651.952 kb on - strand, within SO0625 at 652.022 kb on - strand, within SO0625 at 652.022 kb on - strand, within SO0625 at 652.041 kb on + strand, within SO0625 at 652.124 kb on - strand, within SO0625 at 652.223 kb on - strand, within SO0625 at 652.277 kb on - strand, within SO0625 at 652.277 kb on - strand, within SO0625 at 652.535 kb on + strand at 652.538 kb on - strand at 652.551 kb on + strand at 652.559 kb on - strand at 652.598 kb on + strand at 652.687 kb on - strand at 652.731 kb on + strand at 652.739 kb on - strand at 652.771 kb on + strand at 652.774 kb on - strand at 652.938 kb on + strand, within SO0627 at 652.997 kb on + strand, within SO0627 at 653.005 kb on - strand, within SO0627 at 653.014 kb on + strand, within SO0627 at 653.033 kb on + strand, within SO0627 at 653.048 kb on + strand, within SO0627 at 653.155 kb on - strand, within SO0627 at 653.288 kb on + strand at 653.296 kb on + strand at 653.296 kb on - strand at 653.304 kb on - strand at 653.418 kb on + strand at 653.538 kb on + strand at 653.600 kb on - strand at 653.643 kb on + strand at 653.687 kb on - strand, within SO0628 at 653.812 kb on + strand, within SO0628 at 653.844 kb on + strand, within SO0628 at 653.852 kb on - strand, within SO0628 at 653.853 kb on + strand, within SO0628 at 653.868 kb on + strand, within SO0628 at 653.892 kb on + strand, within SO0628 at 653.892 kb on + strand, within SO0628 at 653.900 kb on - strand, within SO0628 at 653.900 kb on - strand, within SO0628 at 653.958 kb on - strand, within SO0628 at 654.031 kb on - strand, within SO0628 at 654.038 kb on + strand, within SO0628 at 654.038 kb on + strand, within SO0628 at 654.046 kb on - strand, within SO0628 at 654.046 kb on - strand, within SO0628 at 654.051 kb on - strand, within SO0628 at 654.103 kb on + strand, within SO0628 at 654.142 kb on + strand, within SO0628 at 654.171 kb on + strand, within SO0628 at 654.197 kb on + strand, within SO0628 at 654.267 kb on + strand, within SO0628 at 654.267 kb on + strand, within SO0628 at 654.285 kb on - strand, within SO0628
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 651,763 + +0.1 651,771 - +0.8 651,773 - +0.7 651,792 + -0.5 651,800 - +0.5 651,808 - -0.4 651,808 - +0.6 651,808 - +0.4 651,816 + -0.3 651,835 + +0.4 651,838 - -0.0 651,848 + +1.1 651,848 + +0.4 651,856 - +0.3 651,856 - +0.4 651,857 - +0.1 651,928 + SO0625 0.16 +0.0 651,938 + SO0625 0.18 +0.4 651,946 - SO0625 0.19 +0.6 651,946 - SO0625 0.19 -0.0 651,946 - SO0625 0.19 +0.8 651,946 - SO0625 0.19 +1.0 651,946 - SO0625 0.19 +0.4 651,946 - SO0625 0.19 +0.0 651,952 - SO0625 0.19 +0.2 652,022 - SO0625 0.28 +0.2 652,022 - SO0625 0.28 -0.1 652,041 + SO0625 0.31 +1.1 652,124 - SO0625 0.42 +0.9 652,223 - SO0625 0.54 +0.4 652,277 - SO0625 0.61 +1.3 652,277 - SO0625 0.61 -0.4 652,535 + +0.2 652,538 - -0.5 652,551 + +0.1 652,559 - -0.5 652,598 + +0.1 652,687 - +2.6 652,731 + -0.2 652,739 - -0.1 652,771 + +0.2 652,774 - -1.4 652,938 + SO0627 0.36 -0.1 652,997 + SO0627 0.46 -0.9 653,005 - SO0627 0.48 -0.5 653,014 + SO0627 0.49 -1.0 653,033 + SO0627 0.53 +0.1 653,048 + SO0627 0.55 -1.9 653,155 - SO0627 0.75 -0.2 653,288 + +0.3 653,296 + +1.2 653,296 - -0.4 653,304 - -0.3 653,418 + +0.5 653,538 + +0.9 653,600 - +1.2 653,643 + -0.8 653,687 - SO0628 0.10 -0.0 653,812 + SO0628 0.16 -0.2 653,844 + SO0628 0.17 +0.0 653,852 - SO0628 0.18 +0.4 653,853 + SO0628 0.18 -0.6 653,868 + SO0628 0.18 +0.3 653,892 + SO0628 0.19 +0.7 653,892 + SO0628 0.19 +0.3 653,900 - SO0628 0.20 +0.3 653,900 - SO0628 0.20 +0.0 653,958 - SO0628 0.22 +1.6 654,031 - SO0628 0.26 +0.2 654,038 + SO0628 0.26 -0.6 654,038 + SO0628 0.26 -0.7 654,046 - SO0628 0.26 -0.2 654,046 - SO0628 0.26 -0.6 654,051 - SO0628 0.27 +0.4 654,103 + SO0628 0.29 +0.3 654,142 + SO0628 0.31 -0.1 654,171 + SO0628 0.32 +0.7 654,197 + SO0628 0.33 -0.1 654,267 + SO0628 0.37 +0.0 654,267 + SO0628 0.37 +0.9 654,285 - SO0628 0.37 -0.1
Or see this region's nucleotide sequence