Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rsd and hemE are separated by 458 nucleotides hemE and SO0437 are separated by 659 nucleotides
SO0433: rsd - regulator of sigma D (NCBI ptt file), at 458,543 to 459,028
rsd
SO0435: hemE - uroporphyrinogen decarboxylase (NCBI ptt file), at 459,487 to 460,551
hemE
SO0437: SO0437 - sensory box protein (NCBI ptt file), at 461,211 to 463,781
SO0437
Position (kb) 459
460
461 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 458.510 kb on + strand at 458.548 kb on - strand at 458.576 kb on + strand at 458.576 kb on + strand at 458.599 kb on + strand, within rsd at 458.624 kb on + strand, within rsd at 458.625 kb on + strand, within rsd at 458.655 kb on + strand, within rsd at 458.705 kb on + strand, within rsd at 458.713 kb on - strand, within rsd at 458.713 kb on - strand, within rsd at 458.713 kb on - strand, within rsd at 458.804 kb on + strand, within rsd at 458.812 kb on + strand, within rsd at 458.812 kb on + strand, within rsd at 458.812 kb on - strand, within rsd at 458.823 kb on + strand, within rsd at 458.867 kb on - strand, within rsd at 458.901 kb on + strand, within rsd at 458.901 kb on + strand, within rsd at 458.901 kb on + strand, within rsd at 458.903 kb on - strand, within rsd at 458.908 kb on - strand, within rsd at 458.970 kb on + strand, within rsd at 458.978 kb on - strand, within rsd at 459.058 kb on + strand at 459.058 kb on + strand at 459.086 kb on - strand at 459.204 kb on + strand at 459.204 kb on + strand at 459.212 kb on - strand at 459.248 kb on - strand at 459.250 kb on + strand at 459.277 kb on + strand at 460.546 kb on + strand at 460.550 kb on + strand at 460.581 kb on - strand at 460.604 kb on - strand at 460.610 kb on + strand at 461.055 kb on - strand at 461.079 kb on + strand at 461.099 kb on + strand at 461.174 kb on - strand at 461.252 kb on + strand at 461.278 kb on + strand at 461.284 kb on + strand at 461.418 kb on + strand at 461.426 kb on - strand at 461.435 kb on - strand at 461.484 kb on - strand, within SO0437 at 461.484 kb on - strand, within SO0437 at 461.500 kb on + strand, within SO0437 at 461.500 kb on + strand, within SO0437 at 461.508 kb on - strand, within SO0437 at 461.508 kb on - strand, within SO0437
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 458,510 + -0.8 458,548 - -0.3 458,576 + -1.0 458,576 + +0.2 458,599 + rsd SO0433 0.12 -1.0 458,624 + rsd SO0433 0.17 -2.3 458,625 + rsd SO0433 0.17 -1.6 458,655 + rsd SO0433 0.23 -0.5 458,705 + rsd SO0433 0.33 -0.3 458,713 - rsd SO0433 0.35 -2.0 458,713 - rsd SO0433 0.35 -1.2 458,713 - rsd SO0433 0.35 -1.5 458,804 + rsd SO0433 0.54 -1.6 458,812 + rsd SO0433 0.55 -1.0 458,812 + rsd SO0433 0.55 -1.5 458,812 - rsd SO0433 0.55 -0.8 458,823 + rsd SO0433 0.58 -0.9 458,867 - rsd SO0433 0.67 -0.9 458,901 + rsd SO0433 0.74 -0.7 458,901 + rsd SO0433 0.74 -2.0 458,901 + rsd SO0433 0.74 -0.8 458,903 - rsd SO0433 0.74 -1.3 458,908 - rsd SO0433 0.75 -1.3 458,970 + rsd SO0433 0.88 +0.6 458,978 - rsd SO0433 0.90 -0.6 459,058 + -1.3 459,058 + -1.1 459,086 - -2.1 459,204 + +7.1 459,204 + +5.9 459,212 - +6.6 459,248 - +6.9 459,250 + +6.6 459,277 + +6.8 460,546 + +0.3 460,550 + +0.1 460,581 - +1.0 460,604 - -0.1 460,610 + +0.1 461,055 - +0.4 461,079 + +0.7 461,099 + -0.0 461,174 - -0.1 461,252 + -1.1 461,278 + +0.4 461,284 + -0.2 461,418 + -0.4 461,426 - -1.2 461,435 - -0.7 461,484 - SO0437 0.11 -1.1 461,484 - SO0437 0.11 -0.4 461,500 + SO0437 0.11 +0.2 461,500 + SO0437 0.11 +1.2 461,508 - SO0437 0.12 -0.1 461,508 - SO0437 0.12 +0.4
Or see this region's nucleotide sequence